RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FGRP09769 529 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 CYP2D6P10635 497 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 EIF5P55010 431 aaKnown RBP18.36■□□□□ 0.53
SDC4-201ENST00000372733 MEA1Q16626 185 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 HINFPQ9BQA5 517 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 TMEM60Q9H2L4 133 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 THAP9Q9H5L6 903 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 MAGEC2Q9UBF1 373 aaPredicted RBP18.36■□□□□ 0.53
SDC4-201ENST00000372733 MACROD2A1Z1Q3 448 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 KRT86O43790 486 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 TRIM21P19474 475 aaKnown RBP18.35■□□□□ 0.53
SDC4-201ENST00000372733 KRT83P78385 493 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 CYP27A1Q02318 531 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 CKAP4Q07065 602 aaKnown RBP18.35■□□□□ 0.53
SDC4-201ENST00000372733 C2orf54Q08AI8 447 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 STIM1Q13586 685 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 SLC4A8Q2Y0W8 1093 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 TTI2Q6NXR4 508 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 BLIDQ8IZY5 108 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 LRRC15Q8TF66 581 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 TTYH3Q9C0H2 523 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 MKRN1Q9UHC7 482 aaKnown RBP18.35■□□□□ 0.53
SDC4-201ENST00000372733 RASSF10A6NK89 507 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 PSMA7O14818 248 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 SRGNP10124 158 aa18.35■□□□□ 0.53
SDC4-201ENST00000372733 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.35■□□□□ 0.53
SDC4-201ENST00000372733 TARSL2A2RTX5 802 aaKnown RBP18.34■□□□□ 0.53
SDC4-201ENST00000372733 EIF3CLB5ME19 914 aaKnown RBP18.34■□□□□ 0.53
SDC4-201ENST00000372733 MCM3P25205 808 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 CYLC1P35663 651 aaPredicted RBP18.34■□□□□ 0.53
SDC4-201ENST00000372733 GGCXP38435 758 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 EHBP1Q8NDI1 1231 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 EIF3CQ99613 913 aaKnown RBP18.34■□□□□ 0.53
SDC4-201ENST00000372733 TUBGCP2Q9BSJ2 902 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 SELENOOQ9BVL4 669 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 NHEJ1Q9H9Q4 299 aaPredicted RBP18.34■□□□□ 0.53
SDC4-201ENST00000372733 NTSR2O95665 410 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 IDEP14735 1019 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 DNM2P50570 870 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 TYW1BQ6NUM6 668 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 DUSP9Q99956 384 aaKnown RBP18.34■□□□□ 0.53
SDC4-201ENST00000372733 EXOC1Q9NV70 894 aa18.34■□□□□ 0.53
SDC4-201ENST00000372733 KCNB1Q14721 858 aa18.33■□□□□ 0.53
SDC4-201ENST00000372733 DTHD1Q6ZMT9 781 aa18.33■□□□□ 0.53
SDC4-201ENST00000372733 CSGALNACT2Q8N6G5 542 aa18.33■□□□□ 0.53
SDC4-201ENST00000372733 A0A1B0GUL6 1792 aa18.33■□□□□ 0.52
SDC4-201ENST00000372733 GIMAP8Q8ND71 665 aaPredicted RBP18.33■□□□□ 0.52
SDC4-201ENST00000372733 SMCR8Q8TEV9 937 aaPredicted RBP18.33■□□□□ 0.52
SDC4-201ENST00000372733 SMARCC1Q92922 1105 aaPredicted RBP18.33■□□□□ 0.52
SDC4-201ENST00000372733 PCMTD1Q96MG8 357 aaPredicted RBP18.33■□□□□ 0.52
SDC4-201ENST00000372733 CRACR2AQ9BSW2 395 aa18.33■□□□□ 0.52
SDC4-201ENST00000372733 JADE2Q9NQC1 790 aa18.33■□□□□ 0.52
SDC4-201ENST00000372733 NIP7Q9Y221 180 aaKnown RBP eCLIP18.33■□□□□ 0.52
SDC4-201ENST00000372733 A0A0G2JS52 829 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 NKRFO15226 690 aaKnown RBP eCLIP18.32■□□□□ 0.52
SDC4-201ENST00000372733 ORC4O43929 436 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 RHOBTB3O94955 611 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 IPO7O95373 1038 aaKnown RBP18.32■□□□□ 0.52
SDC4-201ENST00000372733 PCP11498 1178 aaKnown RBP18.32■□□□□ 0.52
SDC4-201ENST00000372733 CALML3P27482 149 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 SKIDA1Q1XH10 827 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 RPGRIP1Q96KN7 1286 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 CNOT6LQ96LI5 555 aaKnown RBP18.32■□□□□ 0.52
SDC4-201ENST00000372733 ZNHIT6Q9NWK9 470 aaKnown RBP18.32■□□□□ 0.52
SDC4-201ENST00000372733 AGPSO00116 658 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 UBA7P41226 1012 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 TBC1D8BQ0IIM8 1120 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 RCSD1Q6JBY9 416 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 INTS5Q6P9B9 1019 aaKnown RBP18.32■□□□□ 0.52
SDC4-201ENST00000372733 ZNF662Q6ZS27 426 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 KRT26Q7Z3Y9 468 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 PCDHA4Q9UN74 947 aa18.32■□□□□ 0.52
SDC4-201ENST00000372733 PHLPP1O60346 1717 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 CCDC194A0A1B0GVG4 234 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 TSPY2A6NKD2 308 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 CAMTA2O94983 1202 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 EZH2Q15910 746 aaKnown RBP18.31■□□□□ 0.52
SDC4-201ENST00000372733 INF2Q27J81 1249 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 GPIHBP1Q8IV16 184 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 DCP1AQ9NPI6 582 aaPredicted RBP18.31■□□□□ 0.52
SDC4-201ENST00000372733 BTG4Q9NY30 223 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 ZNF263O14978 683 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 PPFIA4O75335 1185 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 PLEKP08567 350 aaPredicted RBP18.31■□□□□ 0.52
SDC4-201ENST00000372733 CCNI2Q6ZMN8 369 aaPredicted RBP18.31■□□□□ 0.52
SDC4-201ENST00000372733 STAG2Q8N3U4 1231 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 DRC1Q96MC2 740 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 PURBQ96QR8 312 aaKnown RBP18.31■□□□□ 0.52
SDC4-201ENST00000372733 KBTBD4Q9NVX7 518 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 LRWD1Q9UFC0 647 aa18.31■□□□□ 0.52
SDC4-201ENST00000372733 ANO9A1A5B4 782 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 MAGEA9P43362 315 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 MRPS25P82663 173 aaKnown RBP18.3■□□□□ 0.52
SDC4-201ENST00000372733 ZBED6P86452 979 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 CCDC178Q5BJE1 867 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 C3orf67Q6ZVT6 689 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 CCDC87Q9NVE4 849 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 MTIF2P46199 727 aaKnown RBP18.3■□□□□ 0.52
SDC4-201ENST00000372733 PARP10Q53GL7 1025 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 SECISBP2LQ93073 1101 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms