RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 VPS54Q9P1Q0 977 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 PACSIN2Q9UNF0 486 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 KDRP35968 1356 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 TCHHQ07283 1943 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 ATP10AO60312 1499 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 PPFIA2O75334 1257 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 KCTD19Q17RG1 926 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 ACCSLQ4AC99 568 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 RETREG2Q8NC44 543 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 GSDMBQ8TAX9 411 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 MS4A14Q96JA4 679 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 TSG101Q99816 390 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 WASLO00401 505 aaPredicted RBP12.96□□□□□ -0.33
PTPN1-201ENST00000371621 TRIM37O94972 964 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 SCTRP47872 440 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 METTL24Q5JXM2 366 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 RFX8Q6ZV50 586 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 ENGASEQ8NFI3 743 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 NHEJ1Q9H9Q4 299 aaPredicted RBP12.96□□□□□ -0.33
PTPN1-201ENST00000371621 PICK1Q9NRD5 415 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 MFSD6Q6ZSS7 791 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 EPSTI1Q96J88 318 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 CSRNP2Q9H175 543 aa12.96□□□□□ -0.33
PTPN1-201ENST00000371621 TTC26A0AVF1 554 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 TPP2P29144 1249 aaPredicted RBP12.96□□□□□ -0.34
PTPN1-201ENST00000371621 PLTPP55058 493 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 PDE4DQ08499 809 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 MAP7D1Q3KQU3 841 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 SH2D4BQ5SQS7 431 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 RBM43Q6ZSC3 357 aaKnown RBP12.96□□□□□ -0.34
PTPN1-201ENST00000371621 CCHCR1Q8TD31 782 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 HDAC7Q8WUI4 952 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 RAB3IPQ96QF0 476 aaPredicted RBP12.96□□□□□ -0.34
PTPN1-201ENST00000371621 CYTH2Q99418 400 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 ANGEL1Q9UNK9 670 aaKnown RBP12.96□□□□□ -0.34
PTPN1-201ENST00000371621 FAF1Q9UNN5 650 aaPredicted RBP12.96□□□□□ -0.34
PTPN1-201ENST00000371621 PTCH1Q13635 1447 aa12.96□□□□□ -0.34
PTPN1-201ENST00000371621 SHROOM2Q13796 1616 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 IRF6O14896 467 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 NR5A1Q13285 461 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 MTMR3Q13615 1198 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 SLMAPQ14BN4 828 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 ZNF274Q96GC6 653 aaPredicted RBP12.95□□□□□ -0.34
PTPN1-201ENST00000371621 SMC6Q96SB8 1091 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 LRP2BPQ9P2M1 347 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.95□□□□□ -0.34
PTPN1-201ENST00000371621 STXBP3O00186 592 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.95□□□□□ -0.34
PTPN1-201ENST00000371621 BPIFA3Q9BQP9 254 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 TBK1Q9UHD2 729 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 RAB21Q9UL25 225 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 DUSP10Q9Y6W6 482 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 RNF113AO15541 343 aaKnown RBP12.95□□□□□ -0.34
PTPN1-201ENST00000371621 ADCY2Q08462 1091 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 CALCOCO2Q13137 446 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 TAOK1Q7L7X3 1001 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 SLC17A8Q8NDX2 589 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 SUCLG2Q96I99 432 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 TCHPQ9BT92 498 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 ECT2Q9H8V3 914 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 RMI1Q9H9A7 625 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 HOMER3Q9NSC5 361 aa12.95□□□□□ -0.34
PTPN1-201ENST00000371621 ADCY9O60503 1353 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 SKIP12755 728 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 CA8P35219 290 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 SERPINB4P48594 390 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 RASSF2P50749 326 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 IFI16Q16666 785 aaKnown RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 EAPPQ56P03 285 aaPredicted RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 OLFML2BQ68BL8 750 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 KSR2Q6VAB6 950 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 PEX26Q7Z412 305 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 NOSTRINQ8IVI9 506 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 C3orf20Q8ND61 904 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 KIFC2Q96AC6 838 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 ATP6V0A4Q9HBG4 840 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 CWC25Q9NXE8 425 aaPredicted RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 MCM8Q9UJA3 840 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 RASAL2Q9UJF2 1139 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 CLASP1Q7Z460 1538 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 ERCC5P28715 1186 aaPredicted RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 PPP2R2AP63151 447 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 SHC4Q6S5L8 630 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 BICDL1Q6ZP65 573 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 CAPN12Q6ZSI9 719 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 METTL16Q86W50 562 aaKnown RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 CFAP61Q8NHU2 1237 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 RPS6KA5O75582 802 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 PARP1P09874 1014 aaKnown RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 HSPD1P10809 573 aaKnown RBP12.94□□□□□ -0.34
PTPN1-201ENST00000371621 NCAPHQ15003 741 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 COPS6Q7L5N1 327 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 SPATA24Q86W54 205 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 CHMP6Q96FZ7 201 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 NUDCD1Q96RS6 583 aa12.94□□□□□ -0.34
PTPN1-201ENST00000371621 ABL1P00519 1130 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 INF2Q27J81 1249 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 ACBD5Q5T8D3 534 aaPredicted RBP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 DTX3LQ8TDB6 740 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 EEF2P13639 858 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms