RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 GNAI2P04899 355 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 HMGB2P26583 209 aaKnown RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 NR1H3Q13133 447 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 MTMR3Q13615 1198 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 PPP2R5BQ15173 497 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 USP51Q70EK9 711 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 IFNL1Q8IU54 200 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 CELF2-AS1Q8N7Q2 184 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 FAM163AQ96GL9 167 aaPredicted RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 FAM210AQ96ND0 272 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 CCDC87Q9NVE4 849 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 MKS1Q9NXB0 559 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 NOD1Q9Y239 953 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 SIP14410 1827 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 UBN2Q6ZU65 1347 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 WDR19Q8NEZ3 1342 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 PNMA6EA0A0J9YXQ4 647 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 E2F8A0AVK6 867 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 PRAMEF22A3QJZ6 481 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 CFAP99D6REC4 459 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 PLOD3O60568 738 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 SASH1O94885 1247 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 NTSR2O95665 410 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 NT5C2P49902 561 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 ALDH5A1P51649 535 aaPredicted RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 NEK3P51956 506 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 SF3B3Q15393 1217 aaKnown RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 CRY2Q49AN0 593 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.57□□□□□ -1.68
MCF2-203ENST00000370576 SLC6A19Q695T7 634 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 FAM196AQ6ZSG2 479 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 ZNF454Q8N9F8 522 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 RTF1Q92541 710 aaKnown RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 TAF4BQ92750 862 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 RBM33Q96EV2 1170 aaKnown RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 DAAM1Q9Y4D1 1078 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 OTOFQ9HC10 1997 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 SALL1Q9NSC2 1324 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 SERTM1A2A2V5 107 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 ESPNB1AK53 854 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 PI4K2BG5E9Z4 385 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 FRS3O43559 492 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 NOVP48745 357 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 SATB1Q01826 763 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 KCNC4Q03721 635 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 TCIRG1Q13488 830 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 C1orf141Q5JVX7 400 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 IL31Q6EBC2 164 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 IQCF2Q8IXL9 164 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 CPXCR1Q8N123 301 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 HNRNPLLQ8WVV9 542 aaKnown RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 SYMPKQ92797 1274 aaKnown RBP4.57□□□□□ -1.68
MCF2-203ENST00000370576 BTG4Q9NY30 223 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 ZIM2Q9NZV7 527 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 CEP72Q9P209 647 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 PTPN22Q9Y2R2 807 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 ROBO3Q96MS0 1386 aa4.57□□□□□ -1.68
MCF2-203ENST00000370576 GRM8O00222 908 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 ZBTB24O43167 697 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 TM4SF1P30408 202 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 GNA15P30679 374 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 GALNSP34059 522 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 GJA9P57773 515 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 MTMR1Q13613 665 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 RASGRF1Q13972 1273 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 ELF2Q15723 593 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 SLC27A3Q5K4L6 730 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 ZNF772Q68DY9 489 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 ABRAXAS1Q6UWZ7 409 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 MPRIPQ6WCQ1 1025 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 OTUD6AQ7L8S5 288 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 SAMD14Q8IZD0 417 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 ADAMTS18Q8TE60 1221 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 RAPGEF4Q8WZA2 1011 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 KLHL11Q9NVR0 708 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 USP16Q9Y5T5 823 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 THSD7BQ9C0I4 1608 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 GSG1L2A8MUP6 293 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 FAM25EA8MYX2 175 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 FIBPO43427 364 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 CD86P42081 329 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 ITPK1Q13572 414 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 PUM3Q15397 648 aaKnown RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 TBC1D1Q86TI0 1168 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 ZBTB38Q8NAP3 1195 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 ZFATQ9P243 1243 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 EVLQ9UI08 416 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 DOCK1Q14185 1865 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 FOXP2O15409 715 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 TNFRSF21O75509 655 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 SKAP2O75563 359 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 TRIM37O94972 964 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 OATP04181 439 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 PAX7P23759 505 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 FKBP5Q13451 457 aaPredicted RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 CUL4AQ13619 759 aa4.56□□□□□ -1.68
MCF2-203ENST00000370576 INTS11Q5TA45 600 aaKnown RBP4.56□□□□□ -1.68
MCF2-203ENST00000370576 LDHAL6AQ6ZMR3 332 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms