RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 ZSCAN25Q6NSZ9 544 aa9.66□□□□□ -0.86
CD44-205ENST00000352818 PSRC1Q6PGN9 363 aaPredicted RBP9.66□□□□□ -0.86
CD44-205ENST00000352818 BLOC1S2Q6QNY1 142 aa9.66□□□□□ -0.86
CD44-205ENST00000352818 SAMD1Q6SPF0 538 aaPredicted RBP9.66□□□□□ -0.86
CD44-205ENST00000352818 ASCL5Q7RTU5 278 aa9.66□□□□□ -0.86
CD44-205ENST00000352818 PAGR1Q9BTK6 254 aa9.66□□□□□ -0.86
CD44-205ENST00000352818 USP40Q9NVE5 1235 aa9.66□□□□□ -0.86
CD44-205ENST00000352818 ISY1Q9ULR0 285 aaKnown RBP9.66□□□□□ -0.86
CD44-205ENST00000352818 GTPBP6O43824 516 aaPredicted RBP9.65□□□□□ -0.86
CD44-205ENST00000352818 HMGB1P09429 215 aaKnown RBP9.65□□□□□ -0.86
CD44-205ENST00000352818 KCNA4P22459 653 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 PKP1Q13835 747 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 APPBP2Q92624 585 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 MFSD14AQ96MC6 490 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 CNTNAP3BQ96NU0 1288 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 IDI2Q9BXS1 227 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 CNTNAP3Q9BZ76 1288 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.65□□□□□ -0.86
CD44-205ENST00000352818 PCDHA11Q9Y5I1 949 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 GBF1Q92538 1859 aa9.65□□□□□ -0.86
CD44-205ENST00000352818 COL4A6Q14031 1691 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 ANKRD11Q6UB99 2663 aaPredicted RBP9.64□□□□□ -0.87
CD44-205ENST00000352818 ZBTB22O15209 634 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 ENTPD3O75355 529 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 PGK1P00558 417 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 CA3P07451 260 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 MCAMP43121 646 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 ZAP70P43403 619 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 GRB10Q13322 594 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 MTMR2Q13614 643 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 SHROOM1Q2M3G4 852 aaPredicted RBP9.64□□□□□ -0.87
CD44-205ENST00000352818 KLHL40Q2TBA0 621 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 LEXMQ3ZCV2 418 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 OTOP2Q7RTS6 562 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 FBXL16Q8N461 479 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 SEC62Q99442 399 aaKnown RBP9.64□□□□□ -0.87
CD44-205ENST00000352818 UBE2ZQ9H832 354 aaPredicted RBP9.64□□□□□ -0.87
CD44-205ENST00000352818 IL23AQ9NPF7 189 aa9.64□□□□□ -0.87
CD44-205ENST00000352818 FASNP49327 2511 aaKnown RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 ZMYM6O95789 1325 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 GRXCR2A6NFK2 248 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 C19orf67A6NJJ6 358 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 DCDC2CA8MYV0 355 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 LARGE1O95461 756 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 CYP21A2P08686 494 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 HSPD1P10809 573 aaKnown RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 PRDX5P30044 214 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 ID4P47928 161 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 CDK7P50613 346 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 TOB2Q14106 344 aaPredicted RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 UBE3CQ15386 1083 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 L1TD1Q5T7N2 865 aaKnown RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 OLFML2BQ68BL8 750 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 CCDC102BQ68D86 513 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 NOL8Q76FK4 1167 aaKnown RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 OSBP2Q969R2 916 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 LENG1Q96BZ8 264 aaPredicted RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 NEK1Q96PY6 1258 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 AGXT2Q9BYV1 514 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 PPP1R12CQ9BZL4 782 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 CTNNA3Q9UI47 895 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 SMC3Q9UQE7 1217 aa9.63□□□□□ -0.87
CD44-205ENST00000352818 MYO5AQ9Y4I1 1855 aaKnown RBP9.63□□□□□ -0.87
CD44-205ENST00000352818 ZNF292O60281 2723 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 UMODL1Q5DID0 1318 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 PLXNA3P51805 1871 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 FSD2A1L4K1 749 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 SOWAHBA6NEL2 793 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 M0R2C6 588 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 TBC1D12O60347 775 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 COBLO75128 1261 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 CHGBP05060 677 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 CPA1P15085 419 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 CYP2C18P33260 490 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 ADD2P35612 726 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 BACE1P56817 501 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 TAP1Q03518 808 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 ZP2Q05996 745 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 ST3GAL1Q11201 340 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 COL9A2Q14055 689 aaPredicted RBP9.62□□□□□ -0.87
CD44-205ENST00000352818 KCTD2Q14681 263 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 ME3Q16798 604 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 CCDC174Q6PII3 467 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 WDR18Q9BV38 432 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 XPNPEP3Q9NQH7 507 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 LMBRD1Q9NUN5 540 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 BTBD7Q9P203 1132 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 TPCN1Q9ULQ1 816 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 TAF6LQ9Y6J9 622 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 USP24Q9UPU5 2620 aa9.62□□□□□ -0.87
CD44-205ENST00000352818 WDR19Q8NEZ3 1342 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 USP17L5A8MUK1 530 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 PROB1E7EW31 1015 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 ADAMTS4O75173 837 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 FGBP02675 491 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 ZSCAN22P10073 491 aaPredicted RBP9.61□□□□□ -0.87
CD44-205ENST00000352818 KCNA5P22460 613 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 CAP2P40123 477 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 PHKA1P46020 1223 aa9.61□□□□□ -0.87
CD44-205ENST00000352818 IRX5P78411 483 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms