RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 DPYDQ12882 1025 aa20.56■□□□□ 0.88
SMPD1-201ENST00000342245 CCDC38Q502W7 563 aa20.56■□□□□ 0.88
SMPD1-201ENST00000342245 KLHDC4Q8TBB5 520 aa20.56■□□□□ 0.88
SMPD1-201ENST00000342245 AATFQ9NY61 560 aaKnown RBP eCLIP20.56■□□□□ 0.88
SMPD1-201ENST00000342245 CTNND2Q9UQB3 1225 aa20.56■□□□□ 0.88
SMPD1-201ENST00000342245 PARP4Q9UKK3 1724 aaKnown RBP20.56■□□□□ 0.88
SMPD1-201ENST00000342245 ANP32DO95626 131 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 SLC7A5Q01650 507 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 RUFY4Q6ZNE9 571 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 PAGE5Q96GU1 130 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 AIFM3Q96NN9 605 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 ALS2CR12Q96Q35 445 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 FOXP1Q9H334 677 aaPredicted RBP20.55■□□□□ 0.88
SMPD1-201ENST00000342245 SEC31BQ9NQW1 1179 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 TAB2Q9NYJ8 693 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 TSKSQ9UJT2 592 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 ANGEL1Q9UNK9 670 aaKnown RBP20.55■□□□□ 0.88
SMPD1-201ENST00000342245 ECM29Q5VYK3 1845 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 ANTXR2P58335 489 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 NEXNQ0ZGT2 675 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 WDR59Q6PJI9 974 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 PIK3R5Q8WYR1 880 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 STAMBPL1Q96FJ0 436 aa20.55■□□□□ 0.88
SMPD1-201ENST00000342245 LTV1Q96GA3 475 aaPredicted RBP20.55■□□□□ 0.88
SMPD1-201ENST00000342245 GCOM1H8Y6P7 765 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 IFIT3O14879 490 aaKnown RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 MYZAPP0CAP1 466 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 CDC37Q16543 378 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 MB21D1Q8N884 522 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 TBC1D31Q96DN5 1066 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 PLCB1Q9NQ66 1216 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 RFX5P48382 616 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 PTPN12Q05209 780 aaKnown RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 PAK1Q13153 545 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 PPP1R7Q15435 360 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 HIBCHQ6NVY1 386 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 SLC30A9Q6PML9 568 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 THOC1Q96FV9 657 aaKnown RBP20.54■□□□□ 0.88
SMPD1-201ENST00000342245 LACRTQ9GZZ8 138 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 SLC12A6Q9UHW9 1150 aa20.54■□□□□ 0.88
SMPD1-201ENST00000342245 ENO4A6NNW6 628 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 H7C1D1 291 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 OPLAHO14841 1288 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 RTN3O95197 1032 aaPredicted RBP20.53■□□□□ 0.88
SMPD1-201ENST00000342245 FERP16591 822 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 SPA17Q15506 151 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 ANKS4BQ8N8V4 417 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 CCDC63Q8NA47 563 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 CNKSR1Q969H4 720 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 GPR108Q9NPR9 543 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 STRN4Q9NRL3 753 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 ARHGAP23Q9P227 1491 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 PIK3C2AO00443 1686 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 NWD2Q9ULI1 1742 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 BTBD11A6QL63 1104 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 LGALS16A8MUM7 142 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 CAND2O75155 1236 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 HSPA9P38646 679 aaKnown RBP20.53■□□□□ 0.88
SMPD1-201ENST00000342245 SPRED3Q2MJR0 410 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 TEX9Q8N6V9 391 aa20.53■□□□□ 0.88
SMPD1-201ENST00000342245 PYM1Q9BRP8 204 aaKnown RBP20.53■□□□□ 0.88
SMPD1-201ENST00000342245 NHEJ1Q9H9Q4 299 aaPredicted RBP20.53■□□□□ 0.88
SMPD1-201ENST00000342245 GOLGA6L10A0A0M3HER8 536 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 A1BGP04217 495 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 ZFYP08048 801 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-201ENST00000342245 TOB1P50616 345 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-201ENST00000342245 MKRN4PQ13434 485 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-201ENST00000342245 BLMHQ13867 455 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 AGBL2Q5U5Z8 902 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 IQCDQ96DY2 449 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 TAF1DQ9H5J8 278 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-201ENST00000342245 CCT8L1PA6NM43 557 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 MMP1P03956 469 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 KCNA6P17658 529 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 HOXC9P31274 260 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 GRIN1Q05586 938 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 CFAP221Q4G0U5 840 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 CWF19L1Q69YN2 538 aaKnown RBP20.52■□□□□ 0.88
SMPD1-201ENST00000342245 MAATS1Q7Z4T9 603 aa20.52■□□□□ 0.88
SMPD1-201ENST00000342245 L3MBTL3Q96JM7 780 aaPredicted RBP20.52■□□□□ 0.88
SMPD1-201ENST00000342245 NUTM2BA6NNL0 878 aaPredicted RBP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 NUTM2EB1AL46 878 aaPredicted RBP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 TRIM37O94972 964 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 CCND1P24385 295 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 EEF1GP26641 437 aaKnown RBP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 SSRP1Q08945 709 aaKnown RBP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 RPUSD2Q8IZ73 545 aaKnown RBP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 CSRNP2Q9H175 543 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 RMND1Q9NWS8 449 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 NFU1Q9UMS0 254 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 MACROD2A1Z1Q3 448 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 ZNF213O14771 459 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 ALADP13716 330 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 MATR3P43243 847 aaKnown RBP eCLIP20.51■□□□□ 0.87
SMPD1-201ENST00000342245 KIAA0753Q2KHM9 967 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 CACNA2D4Q7Z3S7 1137 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 CPLX4Q7Z7G2 160 aa20.51■□□□□ 0.87
SMPD1-201ENST00000342245 A6NHS1 94 aa20.5■□□□□ 0.87
SMPD1-201ENST00000342245 M0R2C6 588 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms