RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SPICE1Q8N0Z3 855 aa15.27■□□□□ 0.03
HMGB1-202ENST00000339872 DNAJC25Q9H1X3 360 aa15.27■□□□□ 0.03
HMGB1-202ENST00000339872 BIN2Q9UBW5 565 aaPredicted RBP15.27■□□□□ 0.03
HMGB1-202ENST00000339872 HACL1Q9UJ83 578 aa15.27■□□□□ 0.03
HMGB1-202ENST00000339872 UTRNP46939 3433 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 VWA3AA6NCI4 1184 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 BMP3P12645 472 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 NONOQ15233 471 aaKnown RBP eCLIP15.26■□□□□ 0.03
HMGB1-202ENST00000339872 STX1AQ16623 288 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 ACER1Q8TDN7 264 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 SYNPO2Q9UMS6 1093 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 CDC37Q16543 378 aaPredicted RBP15.26■□□□□ 0.03
HMGB1-202ENST00000339872 QRICH1Q2TAL8 776 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 LONRF3Q496Y0 759 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 JAKMIP3Q5VZ66 844 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 USP49Q70CQ1 688 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 CNNM3Q8NE01 707 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 TEPSINQ96N21 525 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 TMEM260Q9NX78 707 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 KIAA1468Q9P260 1216 aa15.26■□□□□ 0.03
HMGB1-202ENST00000339872 A0A087WWV3 80 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 TMEM232C9JQI7 657 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 H7C1D1 291 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 MAP3K10Q02779 954 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 KRBA2Q6ZNG9 492 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 GOPCQ9HD26 462 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 TMX2Q9Y320 296 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 POLR2DO15514 142 aaKnown RBP15.25■□□□□ 0.03
HMGB1-202ENST00000339872 ZRSR1Q15695 479 aaKnown RBP15.25■□□□□ 0.03
HMGB1-202ENST00000339872 PDILTQ8N807 584 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 SYMPKQ92797 1274 aaKnown RBP15.25■□□□□ 0.03
HMGB1-202ENST00000339872 PPP1R9BQ96SB3 815 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 CBX8Q9HC52 389 aa15.25■□□□□ 0.03
HMGB1-202ENST00000339872 ZNF165P49910 485 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 LETM2Q2VYF4 491 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 SYDE2Q5VT97 1194 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 LUZP1Q86V48 1076 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 TBCKQ8TEA7 893 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 EPSTI1Q96J88 318 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 RIC8AQ9NPQ8 531 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 ANO10Q9NW15 660 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 USP25Q9UHP3 1055 aa15.24■□□□□ 0.03
HMGB1-202ENST00000339872 ASNSP08243 561 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 ZYXQ15942 572 aaKnown RBP15.23■□□□□ 0.03
HMGB1-202ENST00000339872 KIAA1755Q5JYT7 1200 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 ARL6IP4Q66PJ3 421 aaKnown RBP15.23■□□□□ 0.03
HMGB1-202ENST00000339872 C11orf57Q6ZUT1 292 aaPredicted RBP15.23■□□□□ 0.03
HMGB1-202ENST00000339872 NEK8Q86SG6 692 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 CCDC84Q86UT8 332 aaPredicted RBP15.23■□□□□ 0.03
HMGB1-202ENST00000339872 GPC2Q8N158 579 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 C4orf32Q8N8J7 132 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 CUL5Q93034 780 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 DEFB129Q9H1M3 183 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 CCNT1O60563 726 aaKnown RBP15.23■□□□□ 0.03
HMGB1-202ENST00000339872 SNAP25P60880 206 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 PNOCQ13519 176 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 IL17AQ16552 155 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 UBE2SQ16763 222 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 TRPM4Q8TD43 1214 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 SH2D4AQ9H788 454 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 GPRC5DQ9NZD1 345 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 SERTAD1Q9UHV2 236 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 PCDHA1Q9Y5I3 950 aa15.23■□□□□ 0.03
HMGB1-202ENST00000339872 PHF20L1A8MW92 1017 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 BIN1O00499 593 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 CAVIN2O95810 425 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 STAT2P52630 851 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 FAM83BQ5T0W9 1011 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 ANGEL2Q5VTE6 544 aaKnown RBP15.22■□□□□ 0.03
HMGB1-202ENST00000339872 GLIS2Q9BZE0 524 aaPredicted RBP15.22■□□□□ 0.03
HMGB1-202ENST00000339872 TMEM60Q9H2L4 133 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 MRPL12P52815 198 aaKnown RBP15.22■□□□□ 0.03
HMGB1-202ENST00000339872 PLCB2Q00722 1185 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 BTNL9Q6UXG8 535 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 DHX58Q96C10 678 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 PDLIM2Q96JY6 352 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 SYT17Q9BSW7 474 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 VCPKMTQ9H867 229 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 PSTPIP2Q9H939 334 aa15.22■□□□□ 0.03
HMGB1-202ENST00000339872 HOOK1Q9UJC3 728 aaKnown RBP15.22■□□□□ 0.03
HMGB1-202ENST00000339872 A0A087X0B3 334 aa15.21■□□□□ 0.03
HMGB1-202ENST00000339872 FOXN1O15353 648 aa15.21■□□□□ 0.03
HMGB1-202ENST00000339872 AMNQ9BXJ7 453 aa15.21■□□□□ 0.03
HMGB1-202ENST00000339872 DOCK1Q14185 1865 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 LAD1O00515 517 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 ACTN4O43707 911 aaKnown RBP15.21■□□□□ 0.02
HMGB1-202ENST00000339872 NEMFO60524 1076 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 LONP1P36776 959 aaKnown RBP15.21■□□□□ 0.02
HMGB1-202ENST00000339872 CLK2P49760 499 aaKnown RBP15.21■□□□□ 0.02
HMGB1-202ENST00000339872 USH1GQ495M9 461 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 NBPF12Q5TAG4 269 aaPredicted RBP15.21■□□□□ 0.02
HMGB1-202ENST00000339872 DTHD1Q6ZMT9 781 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 FBXO11Q86XK2 927 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 APOBEC3FQ8IUX4 373 aaKnown RBP15.21■□□□□ 0.02
HMGB1-202ENST00000339872 CEP57L1Q8IYX8 460 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 TRIM44Q96DX7 344 aaPredicted RBP15.21■□□□□ 0.02
HMGB1-202ENST00000339872 FEZ1Q99689 392 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 ZNF341Q9BYN7 854 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 PRR12Q9ULL5 1215 aa15.21■□□□□ 0.02
HMGB1-202ENST00000339872 MYH7BA7E2Y1 1941 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms