RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 LPAR1Q92633 364 aa16.83■□□□□ 0.28
CBX3-201ENST00000337620 PCDHB6Q9Y5E3 794 aa16.83■□□□□ 0.28
CBX3-201ENST00000337620 PCDHA1Q9Y5I3 950 aa16.83■□□□□ 0.28
CBX3-201ENST00000337620 CCDC194A0A1B0GVG4 234 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 M0R2N6 131 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 MARCKSP29966 332 aaPredicted RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 ADCY7P51828 1080 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 USP14P54578 494 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 TTLL12Q14166 644 aaPredicted RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 NOL9Q5SY16 702 aaKnown RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 RRAGCQ9HB90 399 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 FEM1BQ9UK73 627 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 PCDHA7Q9UN72 937 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 WDR90Q96KV7 1748 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 ESYT2A0FGR8 921 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 WDR46O15213 610 aaKnown RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 POTEIP0CG38 1075 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 POTEJP0CG39 1038 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 IREB2P48200 963 aaKnown RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 BACE1P56817 501 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 VGLL4Q14135 290 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 PTPAQ15257 358 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 PPP1R18Q6NYC8 613 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 FAM160B2Q86V87 743 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 FBXO11Q86XK2 927 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 AMNQ9BXJ7 453 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 EMILIN3Q9NT22 766 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 FBXO28Q9NVF7 368 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 BIN2Q9UBW5 565 aaPredicted RBP16.82■□□□□ 0.28
CBX3-201ENST00000337620 CSADQ9Y600 493 aa16.82■□□□□ 0.28
CBX3-201ENST00000337620 USH1GQ495M9 461 aa16.81■□□□□ 0.28
CBX3-201ENST00000337620 TMEM63CQ9P1W3 806 aa16.81■□□□□ 0.28
CBX3-201ENST00000337620 PLA2G6O60733 806 aa16.81■□□□□ 0.28
CBX3-201ENST00000337620 JAKMIP3Q5VZ66 844 aa16.81■□□□□ 0.28
CBX3-201ENST00000337620 REXO1Q8N1G1 1221 aaKnown RBP16.81■□□□□ 0.28
CBX3-201ENST00000337620 TANGO6Q9C0B7 1094 aa16.81■□□□□ 0.28
CBX3-201ENST00000337620 CEP131Q9UPN4 1083 aa16.81■□□□□ 0.28
CBX3-201ENST00000337620 VCAM1P19320 739 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 ZNF174Q15697 407 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 TTC38Q5R3I4 469 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 MAP1SQ66K74 1059 aaPredicted RBP16.8■□□□□ 0.28
CBX3-201ENST00000337620 CCDC174Q6PII3 467 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 MOB2Q70IA6 237 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 JMYQ8N9B5 988 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 CUL5Q93034 780 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 PSTPIP2Q9H939 334 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 RIC8AQ9NPQ8 531 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 SNCAIPQ9Y6H5 919 aa16.8■□□□□ 0.28
CBX3-201ENST00000337620 WNT7AO00755 349 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 PPP6R2O75170 966 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 LIG1P18858 919 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 MRPL12P52815 198 aaKnown RBP16.79■□□□□ 0.28
CBX3-201ENST00000337620 HMGCS2P54868 508 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 ADALQ6DHV7 355 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 KRT25Q7Z3Z0 450 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 CCAR1Q8IX12 1150 aaKnown RBP16.79■□□□□ 0.28
CBX3-201ENST00000337620 TMEM260Q9NX78 707 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 TRAPPC10P48553 1259 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 INF2Q27J81 1249 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 SYAP1Q96A49 352 aaPredicted RBP16.79■□□□□ 0.28
CBX3-201ENST00000337620 RPAP3Q9H6T3 665 aaPredicted RBP16.79■□□□□ 0.28
CBX3-201ENST00000337620 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.79■□□□□ 0.28
CBX3-201ENST00000337620 AFG3L2Q9Y4W6 797 aa16.79■□□□□ 0.28
CBX3-201ENST00000337620 C19orf81C9J6K1 198 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 TAL1P17542 331 aaPredicted RBP16.78■□□□□ 0.28
CBX3-201ENST00000337620 NONOQ15233 471 aaKnown RBP eCLIP16.78■□□□□ 0.28
CBX3-201ENST00000337620 UBE2SQ16763 222 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 PRPF38AQ8NAV1 312 aaKnown RBP16.78■□□□□ 0.28
CBX3-201ENST00000337620 SLF1Q9BQI6 1058 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 RANBP17Q9H2T7 1088 aaKnown RBP16.78■□□□□ 0.28
CBX3-201ENST00000337620 ELP3Q9H9T3 547 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 FLOT1O75955 427 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 MCM7P33993 719 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 ZSCAN23Q3MJ62 389 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 ANKRD13AQ8IZ07 590 aa16.78■□□□□ 0.28
CBX3-201ENST00000337620 TRAF5O00463 557 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 GSE1Q14687 1217 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 AXDND1Q5T1B0 1012 aaPredicted RBP16.77■□□□□ 0.28
CBX3-201ENST00000337620 FSIP1Q8NA03 581 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 ZNF526Q8TF50 670 aaPredicted RBP16.77■□□□□ 0.28
CBX3-201ENST00000337620 CNKSR2Q8WXI2 1034 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 CLMNQ96JQ2 1002 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 CLIC6Q96NY7 704 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 GLT8D2Q9H1C3 349 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 ZNF408Q9H9D4 720 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 DACT1Q9NYF0 836 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 TMOD4Q9NZQ9 345 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 MRVI1Q9Y6F6 885 aa16.77■□□□□ 0.28
CBX3-201ENST00000337620 USP17L15C9J2P7 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L13C9JLJ4 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L11C9JVI0 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L18D6R9N7 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L22D6RA61 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L17D6RBQ6 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L19D6RCP7 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L20D6RJB6 530 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 NR1I2O75469 434 aa16.76■□□□□ 0.27
CBX3-201ENST00000337620 USP17L24Q0WX57 530 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms