RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CSADQ9Y600 493 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 ZHX2Q9Y6X8 837 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 POLR2AP24928 1970 aaKnown RBP17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 OTOFQ9HC10 1997 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 SMCO2A6NFE2 343 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 SPDYE5A6NIY4 337 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 RAD21O60216 631 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 PPP6R2O75170 966 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 FKBP1BP68106 108 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 MCTP2Q6DN12 878 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 KRT25Q7Z3Z0 450 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 GPT2Q8TD30 523 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 FTOQ9C0B1 505 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 PNMA2Q9UL42 364 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 PCDHA6Q9UN73 950 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 PCDHA8Q9Y5H6 950 aa17.1■□□□□ 0.33
CCDC88C-202ENST00000334448 GADD45BO75293 160 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 CLK2P49760 499 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 ADCY7P51828 1080 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 PPATQ06203 517 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 ORC2Q13416 577 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 EARS2Q5JPH6 523 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 DLK2Q6UY11 383 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 ARMC9Q7Z3E5 817 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 FBXO11Q86XK2 927 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 REXO1Q8N1G1 1221 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 PRPF38AQ8NAV1 312 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 SLF1Q9BQI6 1058 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 ISY1Q9ULR0 285 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 FZD1Q9UP38 647 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 CLIC4Q9Y696 253 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 DDX49Q9Y6V7 483 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 MYPNQ86TC9 1320 aa17.09■□□□□ 0.33
CCDC88C-202ENST00000334448 A0A1W2PQ27 194 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 A0A1W2PQ64 194 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 A0A1W2PQD8 194 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 TRIM75PA6NK02 468 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 CXCL11O14625 94 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 ADAMTS3O15072 1205 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 SPTLC2O15270 562 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 POTEIP0CG38 1075 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 POTEJP0CG39 1038 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 MRPL12P52815 198 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 IKQ13123 557 aaPredicted RBP17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 STK38Q15208 465 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 SF3A1Q15459 793 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 ZYXQ15942 572 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 ERO1BQ86YB8 467 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 JMYQ8N9B5 988 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 CUL5Q93034 780 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 COA7Q96BR5 231 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 PGBD1Q96JS3 809 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 PPP1R9AQ9ULJ8 1098 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 CEP131Q9UPN4 1083 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 KCNH4Q9UQ05 1017 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 PCDHA1Q9Y5I3 950 aa17.08■□□□□ 0.32
CCDC88C-202ENST00000334448 FAM205CA6NFA0 338 aa17.07■□□□□ 0.32
CCDC88C-202ENST00000334448 GHRHRQ02643 423 aa17.07■□□□□ 0.32
CCDC88C-202ENST00000334448 PPIL2Q13356 520 aa17.07■□□□□ 0.32
CCDC88C-202ENST00000334448 RRAGCQ9HB90 399 aa17.07■□□□□ 0.32
CCDC88C-202ENST00000334448 SLC38A10Q9HBR0 1119 aa17.07■□□□□ 0.32
CCDC88C-202ENST00000334448 TCHHQ07283 1943 aa17.07■□□□□ 0.32
CCDC88C-202ENST00000334448 CCDC194A0A1B0GVG4 234 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 PIK3CDO00329 1044 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 AXDND1Q5T1B0 1012 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 MAP1SQ66K74 1059 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 ADALQ6DHV7 355 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 PIK3AP1Q6ZUJ8 805 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 RPAP3Q9H6T3 665 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 PSTPIP2Q9H939 334 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 FBXO28Q9NVF7 368 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 ADAMTS5Q9UNA0 930 aa17.06■□□□□ 0.32
CCDC88C-202ENST00000334448 LOC285556D6RIA3 1793 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 ABCB11O95342 1321 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 A0A0G2JLL6 359 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 FAM237AA0A1B0GTK4 181 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 ICAM1P05362 532 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 OAZ1P54368 228 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 HMGCS2P54868 508 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 AP3B2Q13367 1082 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 PRKG1Q13976 671 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 NONOQ15233 471 aaKnown RBP eCLIP17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 NOM1Q5C9Z4 860 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 TTC38Q5R3I4 469 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 PRRT2Q7Z6L0 340 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 PROCA1Q8NCQ7 364 aaPredicted RBP17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 KIFC2Q96AC6 838 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 MAF1Q9H063 256 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 TMOD4Q9NZQ9 345 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 PCDHA7Q9UN72 937 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 CLEC11AQ9Y240 323 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 PCDHB6Q9Y5E3 794 aa17.05■□□□□ 0.32
CCDC88C-202ENST00000334448 ZNF536O15090 1300 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 OPLAHO14841 1288 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 ME1P48163 572 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 CEBPZQ03701 1054 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 CATSPERGQ6ZRH7 1159 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 SAMD3Q8N6K7 520 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 RASGRP4Q8TDF6 673 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 TANGO6Q9C0B7 1094 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms