RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 PTPN18Q99952 460 aa17.78■□□□□ 0.44
PDLIM5-202ENST00000318007 ASCC2Q9H1I8 757 aaPredicted RBP17.78■□□□□ 0.44
PDLIM5-202ENST00000318007 STK36Q9NRP7 1315 aa17.78■□□□□ 0.44
PDLIM5-202ENST00000318007 PPP1R9AQ9ULJ8 1098 aa17.78■□□□□ 0.44
PDLIM5-202ENST00000318007 LOC285556D6RIA3 1793 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 UNCXA6NJT0 531 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 ADAMTS3O15072 1205 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 STX6O43752 255 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 SLC10A3P09131 477 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 NAPAP54920 295 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 FAM160B2Q86V87 743 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 CHAMP1Q96JM3 812 aa17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 P2RX7Q99572 595 aaKnown RBP17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 CWC22Q9HCG8 908 aaKnown RBP17.77■□□□□ 0.44
PDLIM5-202ENST00000318007 SPDYE16A6NNV3 312 aaPredicted RBP17.77■□□□□ 0.43
PDLIM5-202ENST00000318007 FAM155AB1AL88 458 aaPredicted RBP17.77■□□□□ 0.43
PDLIM5-202ENST00000318007 PDHXO00330 501 aa17.77■□□□□ 0.43
PDLIM5-202ENST00000318007 TRIM29Q14134 588 aa17.77■□□□□ 0.43
PDLIM5-202ENST00000318007 COG2Q14746 738 aa17.77■□□□□ 0.43
PDLIM5-202ENST00000318007 BTNL9Q6UXG8 535 aa17.77■□□□□ 0.43
PDLIM5-202ENST00000318007 PNMA6FA0A0J9YX94 578 aa17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 VWA5AO00534 786 aa17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 KRT40Q6A162 431 aa17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 SMCR8Q8TEV9 937 aaPredicted RBP17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 CREBZFQ9NS37 354 aa17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 KIF3AQ9Y496 699 aa17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 PCDHA1Q9Y5I3 950 aa17.76■□□□□ 0.43
PDLIM5-202ENST00000318007 SMCHD1A6NHR9 2005 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 DEFB115Q30KQ5 88 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 WASF1Q92558 559 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 COL11A1P12107 1806 aaPredicted RBP17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 STXBP3O00186 592 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 IGF2BP3O00425 579 aaKnown RBP eCLIP17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 DSG3P32926 999 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 DDIT3P35638 169 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 NLRP5P59047 1200 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 POTEEQ6S8J3 1075 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 FBXO11Q86XK2 927 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 RASGRP4Q8TDF6 673 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 RANBP17Q9H2T7 1088 aaKnown RBP17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 BARHL2Q9NY43 387 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 CCPG1Q9ULG6 757 aa17.75■□□□□ 0.43
PDLIM5-202ENST00000318007 PARP14Q460N5 1801 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 ALAS1P13196 640 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 HERVK_113P62684 666 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 GNL2Q13823 731 aaKnown RBP17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 FAM173BQ6P4H8 233 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 FBXO18Q8NFZ0 1043 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 OXER1Q8TDS5 423 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 CAPNS2Q96L46 248 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 MTMR6Q9Y217 621 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 ZDHHC9Q9Y397 364 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 ZNF536O15090 1300 aa17.74■□□□□ 0.43
PDLIM5-202ENST00000318007 ZBED4O75132 1171 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 PDCP20941 246 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 SMARCA1P28370 1054 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 NR5A1Q13285 461 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 TMEM132BQ14DG7 1078 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 CCDC102AQ96A19 550 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 MTMR8Q96EF0 704 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 AMNQ9BXJ7 453 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 SLC38A10Q9HBR0 1119 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 RLFQ13129 1914 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 KIF28PB7ZC32 967 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 XBP1P17861 261 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 OSBPP22059 807 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 HOXA7P31268 230 aaPredicted RBP17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 KIF23Q02241 960 aaPredicted RBP17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 SNRNP48Q6IEG0 339 aaKnown RBP17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 PGBD1Q96JS3 809 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 TXNRD2Q9NNW7 524 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 HOXC10Q9NYD6 342 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 BTBD7Q9P203 1132 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 RBM27Q9P2N5 1060 aaKnown RBP17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 RIPK3Q9Y572 518 aa17.73■□□□□ 0.43
PDLIM5-202ENST00000318007 SMCO2A6NFE2 343 aa17.72■□□□□ 0.43
PDLIM5-202ENST00000318007 BTBD18B2RXH4 712 aa17.72■□□□□ 0.43
PDLIM5-202ENST00000318007 UBE2SQ16763 222 aa17.72■□□□□ 0.43
PDLIM5-202ENST00000318007 NOM1Q5C9Z4 860 aaKnown RBP17.72■□□□□ 0.43
PDLIM5-202ENST00000318007 PLA2G6O60733 806 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 MMP1P03956 469 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 PABPC4Q13310 644 aaKnown RBP eCLIP17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 DIS3L2Q8IYB7 885 aaKnown RBP17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 ANKRD13CQ8N6S4 541 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 CHMP5Q9NZZ3 219 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 MANSC4A6NHS7 340 aaPredicted RBP17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 ICAM1P05362 532 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 HOXA13P31271 388 aaPredicted RBP17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 WDR78Q5VTH9 848 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 USP17L6PQ6QN14 398 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 TBC1D5Q92609 795 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 PHF20Q9BVI0 1012 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 R3HDMLQ9H3Y0 253 aa17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 BIN2Q9UBW5 565 aaPredicted RBP17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 ZNF214Q9UL59 606 aaPredicted RBP17.71■□□□□ 0.43
PDLIM5-202ENST00000318007 FAM205CA6NFA0 338 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 RASSF10A6NK89 507 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 NFIBO00712 420 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 CFBP00751 764 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 ZSCAN22P10073 491 aaPredicted RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms