RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 LMBRD1Q9NUN5 540 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 AATFQ9NY61 560 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS41-202ENST00000310301 RASSF2P50749 326 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 KCTD2Q14681 263 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 DCAF17Q5H9S7 520 aaPredicted RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 BCAS4Q8TDM0 211 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 RRP36Q96EU6 259 aaKnown RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 CSRNP1Q96S65 589 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 CNOT7Q9UIV1 285 aaKnown RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 TNNQ9UQP3 1299 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 RAD50Q92878 1312 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 LPXNO60711 386 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 ZNF157P51786 506 aaPredicted RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 TRIM28Q13263 835 aaKnown RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 MTX1Q13505 466 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CCDC14Q49A88 953 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 LRRD1A4D1F6 860 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 SPOPO43791 374 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 BTDP43251 543 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 ATP1A2P50993 1020 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 PPP1R21Q6ZMI0 780 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 DPP9Q86TI2 863 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 NAP1L4Q99733 375 aaKnown RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 TACC3Q9Y6A5 838 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CNGA1P29973 690 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 NAPAP54920 295 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 NLRP12P59046 1061 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 ITPK1Q13572 414 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 KRT71Q3SY84 523 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 TMTC1Q8IUR5 882 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 PLEKHA4Q9H4M7 779 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 FAF1Q9UNN5 650 aaPredicted RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 ITSN1Q15811 1721 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 SYNRGQ9UMZ2 1314 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CEP104O60308 925 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 GYS1P13807 737 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 RASIP1Q5U651 963 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 KRT79Q5XKE5 535 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 PHLDB3Q6NSJ2 640 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 MAPKAPK5Q8IW41 473 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 PLEKHM2Q8IWE5 1019 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CCDC65Q8IXS2 484 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 TGFBRAP1Q8WUH2 860 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 HELLSQ9NRZ9 838 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 SUGT1Q9Y2Z0 365 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 ADGRB2O60241 1585 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 RNF40O75150 1001 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CLTAP09496 248 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CPA1P15085 419 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 CERKLQ49MI3 558 aaPredicted RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 MORC4Q8TE76 937 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 APPBP2Q92624 585 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 MAK16Q9BXY0 300 aaKnown RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 CSRNP2Q9H175 543 aa9.04□□□□□ -0.96
VPS41-202ENST00000310301 ZNF215Q9UL58 517 aaPredicted RBP9.04□□□□□ -0.96
VPS41-202ENST00000310301 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.04□□□□□ -0.96
VPS41-202ENST00000310301 SLC1A4P43007 532 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 SESN3P58005 492 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 TRPC3Q13507 836 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 ANKRD42Q8N9B4 389 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 SLF1Q9BQI6 1058 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 GPR108Q9NPR9 543 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 ADARB2Q9NS39 739 aaKnown RBP9.03□□□□□ -0.96
VPS41-202ENST00000310301 PARP1P09874 1014 aaKnown RBP9.03□□□□□ -0.96
VPS41-202ENST00000310301 CHMLP26374 656 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 CCT5P48643 541 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 GUCY2FP51841 1108 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 HUNKP57058 714 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 HLFQ16534 295 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 GEN1Q17RS7 908 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 CFAP221Q4G0U5 840 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 BEND3Q5T5X7 828 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 DTHD1Q6ZMT9 781 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 DPH6Q7L8W6 267 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 FOXP4Q8IVH2 680 aaPredicted RBP9.03□□□□□ -0.96
VPS41-202ENST00000310301 MICALL2Q8IY33 904 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 IMPG2Q9BZV3 1241 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 ASIC2Q16515 512 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 VWA3BQ502W6 1294 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 PRR16Q569H4 304 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 ANKRD20A3Q5VUR7 823 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 DENND2CQ68D51 928 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 FASTKD5Q7L8L6 764 aaKnown RBP9.03□□□□□ -0.96
VPS41-202ENST00000310301 VWA3AA6NCI4 1184 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 I3L4J1 428 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 BAG2O95816 211 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 UBXN2AP68543 259 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 SEC31BQ9NQW1 1179 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 DDX41Q9UJV9 622 aaKnown RBP9.03□□□□□ -0.96
VPS41-202ENST00000310301 DKC1O60832 514 aaKnown RBP eCLIP9.03□□□□□ -0.96
VPS41-202ENST00000310301 CAMTA2O94983 1202 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 TNFAIP3P21580 790 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 SNX16P57768 344 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 UBL4BQ8N7F7 174 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 FAM71BQ8TC56 605 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 CCT6BQ92526 530 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 C6orf50Q9HD87 102 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 TMEM63CQ9P1W3 806 aa9.03□□□□□ -0.96
VPS41-202ENST00000310301 EFCAB8A8MWE9 144 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms