RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 MAPK4P31152 587 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 GPR142Q7Z601 462 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 TEX13BQ9BXU2 312 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 UPF2Q9HAU5 1272 aaKnown RBP14.86□□□□□ -0.03
SS18-202ENST00000269138 FAM217BQ9NTX9 383 aaPredicted RBP14.86□□□□□ -0.03
SS18-202ENST00000269138 HPS5Q9UPZ3 1129 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 GOLGA8BA8MQT2 603 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 DHX16O60231 1041 aaKnown RBP14.85□□□□□ -0.03
SS18-202ENST00000269138 KIF5BP33176 963 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 NEK4P51957 841 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 PRKCZQ05513 592 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 PLEKHH3Q7Z736 793 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 SRBD1Q8N5C6 995 aaKnown RBP14.85□□□□□ -0.03
SS18-202ENST00000269138 SHCBP1Q8NEM2 672 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 GJD2Q9UKL4 321 aa14.85□□□□□ -0.03
SS18-202ENST00000269138 COL11A1P12107 1806 aaPredicted RBP14.85□□□□□ -0.03
SS18-202ENST00000269138 GOLGA8AA7E2F4 631 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 SLC25A27O95847 323 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 PDIA3P30101 505 aaKnown RBP14.84□□□□□ -0.03
SS18-202ENST00000269138 CDC27P30260 824 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 OAZ1P54368 228 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 AK2P54819 239 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 EVCP57679 992 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 ARHGEF6Q15052 776 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 CDC37Q16543 378 aaPredicted RBP14.84□□□□□ -0.03
SS18-202ENST00000269138 PIBF1Q8WXW3 757 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 COA7Q96BR5 231 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 MTMR8Q96EF0 704 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 TBC1D32Q96NH3 1257 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 ALDH8A1Q9H2A2 487 aaPredicted RBP14.84□□□□□ -0.03
SS18-202ENST00000269138 RIOX1Q9H6W3 641 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 CWC22Q9HCG8 908 aaKnown RBP14.84□□□□□ -0.03
SS18-202ENST00000269138 HOMER2Q9NSB8 354 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 SRRDQ9UH36 339 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 CCPG1Q9ULG6 757 aa14.84□□□□□ -0.03
SS18-202ENST00000269138 ICAM1P05362 532 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 ALAS1P13196 640 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 PTPREP23469 700 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 FLT3LGP49771 235 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 RTN1Q16799 776 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 QRICH1Q2TAL8 776 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 MORN1Q5T089 497 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 TMTC3Q6ZXV5 915 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 NOL8Q76FK4 1167 aaKnown RBP14.83□□□□□ -0.04
SS18-202ENST00000269138 CCDC82Q8N4S0 544 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 PIGSQ96S52 555 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 MROH8Q9H579 483 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 PTPN22Q9Y2R2 807 aa14.83□□□□□ -0.04
SS18-202ENST00000269138 PPP1R11O60927 126 aaPredicted RBP14.82□□□□□ -0.04
SS18-202ENST00000269138 GNRH1P01148 92 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 HOXD10P28358 340 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 ADD1P35611 737 aaKnown RBP14.82□□□□□ -0.04
SS18-202ENST00000269138 GNAQP50148 359 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 METAP2P50579 478 aaKnown RBP eCLIP14.82□□□□□ -0.04
SS18-202ENST00000269138 CCT2P78371 535 aaKnown RBP14.82□□□□□ -0.04
SS18-202ENST00000269138 MUM1L1Q5H9M0 696 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 HOMER1Q86YM7 354 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 LZTS2Q9BRK4 669 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 SPZ1Q9BXG8 430 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 MCOLN1Q9GZU1 580 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 NCOA5Q9HCD5 579 aaKnown RBP14.82□□□□□ -0.04
SS18-202ENST00000269138 RNF146Q9NTX7 359 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 TPCN1Q9ULQ1 816 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 PTCH2Q9Y6C5 1203 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 hCG_1642624A0A1W2PR95 340 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 SLC15A5A6NIM6 579 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 RCAN1P53805 252 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 FUT2Q10981 343 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 STK3Q13188 491 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 USH1GQ495M9 461 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 USP6NLQ92738 828 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 TRERF1Q96PN7 1200 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 RBM28Q9NW13 759 aaKnown RBP14.82□□□□□ -0.04
SS18-202ENST00000269138 IVNS1ABPQ9Y6Y0 642 aa14.82□□□□□ -0.04
SS18-202ENST00000269138 DOCK3Q8IZD9 2030 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 ZBTB5O15062 677 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 COBLO75128 1261 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 CYP2B6P20813 491 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 SMARCA1P28370 1054 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 ADORA2AP29274 412 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 COPB2P35606 906 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 GRB14Q14449 540 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 CHST13Q8NET6 341 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 ZNF274Q96GC6 653 aaPredicted RBP14.81□□□□□ -0.04
SS18-202ENST00000269138 MMP19Q99542 508 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 NUDT12Q9BQG2 462 aa14.81□□□□□ -0.04
SS18-202ENST00000269138 MGAMO43451 1857 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 BAZ2BQ9UIF8 2168 aaKnown RBP14.8□□□□□ -0.04
SS18-202ENST00000269138 STRNO43815 780 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 PGK2P07205 417 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 FCER1AP12319 257 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 MAP2K5Q13163 448 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 TKFCQ3LXA3 575 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 FBXO46Q6PJ61 603 aaPredicted RBP14.8□□□□□ -0.04
SS18-202ENST00000269138 FBXO11Q86XK2 927 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 CLEC4DQ8WXI8 215 aa14.8□□□□□ -0.04
SS18-202ENST00000269138 SMCHD1A6NHR9 2005 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 NID2Q14112 1375 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 PNMA6FA0A0J9YX94 578 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 NFIBO00712 420 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms