RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 BTDP43251 543 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 PRPF4BQ13523 1007 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 CPLX4Q7Z7G2 160 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 RGS22Q8NE09 1264 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 TGFBRAP1Q8WUH2 860 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 LZTS2Q9BRK4 669 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 GPHNQ9NQX3 736 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 BICDL2A1A5D9 508 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 GCOM1H8Y6P7 765 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 MYZAPP0CAP1 466 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 ARHGAP25P42331 645 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 RCAN1P53805 252 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 TRAF1Q13077 416 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 PICALMQ13492 652 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 PTF1AQ7RTS3 328 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 FUCA2Q9BTY2 467 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 AP5Z1O43299 807 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 PPIP5K2O43314 1243 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 E4F1Q66K89 784 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 NOSTRINQ8IVI9 506 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 DHX40Q8IX18 779 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 RTKN2Q8IZC4 609 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 ZSCAN10Q96SZ4 725 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 EPC1Q9H2F5 836 aa12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 N4BP2Q86UW6 1770 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-201ENST00000266546 GOLGA6L10A0A0M3HER8 536 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 GNGT1P63211 74 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 STYK1Q6J9G0 422 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 ZNF654Q8IZM8 581 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 LARGE2Q8N3Y3 721 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 OR8K1Q8NGG5 319 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 SECISBP2LQ93073 1101 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 SH2B2O14492 632 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 ECM2O94769 699 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 HOXA10P31260 410 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 HPDP32754 393 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 CCDC93Q567U6 631 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 SPATA1Q5VX52 437 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 MB21D2Q8IYB1 491 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 FMR1NBQ8N0W7 255 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 FBXO41Q8TF61 875 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 LRRC4BQ9NT99 713 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 GSG1L2A8MUP6 293 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 DDAH1O94760 285 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 CCT5P48643 541 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 PLCD1P51178 756 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 DYNLL1P63167 89 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 EN1Q05925 392 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 IFI16Q16666 785 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 ARMCX5Q6P1M9 558 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 COL23A1Q86Y22 540 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 INCENPQ9NQS7 918 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 hCG_1642624A0A1W2PR95 340 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 PRKAB2O43741 272 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 RNF40O75150 1001 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 PPP6R2O75170 966 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 CASP14P31944 242 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 EXOSC10Q01780 885 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 ZRSR2Q15696 482 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 SEPT7Q16181 437 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 MAPKAPK5Q8IW41 473 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 TBC1D16Q8TBP0 767 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 SPAG5Q96R06 1193 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 PSMB7Q99436 277 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 SELENOOQ9BVL4 669 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 HAUS4Q9H6D7 363 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 V9GY48 417 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 ITGB4P16144 1822 aa12.84□□□□□ -0.35
CLSTN3-201ENST00000266546 KIF23Q02241 960 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 CASP8Q14790 479 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 APOA5Q6Q788 366 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 EFCAB13Q8IY85 973 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 TTLL6Q8N841 843 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 NSUN4Q96CB9 384 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 TNKSO95271 1327 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 BTBD18B2RXH4 712 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 NIM1KQ8IY84 436 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 CMTR1Q8N1G2 835 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 ANKS4BQ8N8V4 417 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 PLIN2Q99541 437 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 CAPS2Q9BXY5 557 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 USP40Q9NVE5 1235 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 CAPN7Q9Y6W3 813 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 POLRMTO00411 1230 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 TADA3O75528 432 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 TNNC1P63316 161 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 TFAP4Q01664 338 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 ARID5AQ03989 594 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 DTHD1Q6ZMT9 781 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 NYAP1Q6ZVC0 841 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 CCDC125Q86Z20 511 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 NOC4LQ9BVI4 516 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 ABCB6Q9NP58 842 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 UBR2Q8IWV8 1755 aa12.83□□□□□ -0.36
CLSTN3-201ENST00000266546 SOWAHDA6NJG2 315 aa12.82□□□□□ -0.36
CLSTN3-201ENST00000266546 PRDX5P30044 214 aa12.82□□□□□ -0.36
CLSTN3-201ENST00000266546 TM4SF1P30408 202 aa12.82□□□□□ -0.36
CLSTN3-201ENST00000266546 TCERG1LQ5VWI1 586 aa12.82□□□□□ -0.36
CLSTN3-201ENST00000266546 PPP1R12BO60237 982 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms