RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 MMTAG2Q9BU76 263 aaKnown RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 DDX4Q9NQI0 724 aaKnown RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 NRDCO43847 1150 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 AFMP43652 599 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 BAZ2BQ9UIF8 2168 aaKnown RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 TEX33O43247 280 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 ZSCAN12O43309 604 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 SHMT1P34896 483 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 DTHD1Q6ZMT9 781 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 RASGRP2Q7LDG7 609 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 KRT27Q7Z3Y8 459 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 ZNF507Q8TCN5 953 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 MFAP3LO75121 409 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 TXNRD1Q16881 649 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 TCP11X2Q5H9J9 407 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 TRMT1Q9NXH9 659 aaKnown RBP12.61□□□□□ -0.39
MSH3-201ENST00000265081 PARP3Q9Y6F1 533 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 ATP2B1P20020 1258 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 GNA11P29992 359 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 PAK1Q13153 545 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 RASGRP4Q8TDF6 673 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 RRP36Q96EU6 259 aaKnown RBP12.61□□□□□ -0.39
MSH3-201ENST00000265081 THAP9Q9H5L6 903 aa12.61□□□□□ -0.39
MSH3-201ENST00000265081 CCDC194A0A1B0GVG4 234 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 SLC26A4O43511 780 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 SLU7O95391 586 aaKnown RBP12.6□□□□□ -0.39
MSH3-201ENST00000265081 GYPCP04921 128 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 SPAG1Q07617 926 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 KRT31Q15323 416 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 APOBEC3HQ6NTF7 200 aaKnown RBP12.6□□□□□ -0.39
MSH3-201ENST00000265081 CGNQ9P2M7 1197 aaKnown RBP12.6□□□□□ -0.39
MSH3-201ENST00000265081 A0A1W2PQC6 194 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 OR52Z1P0C646 297 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 TRIM14Q14142 442 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 NONOQ15233 471 aaKnown RBP eCLIP12.6□□□□□ -0.39
MSH3-201ENST00000265081 INF2Q27J81 1249 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 MKL1Q969V6 931 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 C6orf50Q9HD87 102 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 ZNF215Q9UL58 517 aaPredicted RBP12.6□□□□□ -0.39
MSH3-201ENST00000265081 USP17L5A8MUK1 530 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 AKR1B15C9JRZ8 316 aaPredicted RBP12.6□□□□□ -0.39
MSH3-201ENST00000265081 H7C1D1 291 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 PRCPP42785 496 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 HDLBPQ00341 1268 aaKnown RBP12.6□□□□□ -0.39
MSH3-201ENST00000265081 EHHADHQ08426 723 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 TOGARAM2Q6ZUX3 1019 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 CTNND2Q9UQB3 1225 aa12.6□□□□□ -0.39
MSH3-201ENST00000265081 ATRNL1Q5VV63 1379 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 H2AFXP16104 143 aaPredicted RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 TXLNAP40222 546 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 KARSQ15046 597 aaKnown RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 HEATR3Q7Z4Q2 680 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 NEK8Q86SG6 692 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 UBE2Q2Q8WVN8 375 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 ZDHHC15Q96MV8 337 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 SRRTQ9BXP5 876 aaKnown RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 ATF5Q9Y2D1 282 aaPredicted RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 HYIQ5T013 277 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 PPP4R3AQ6IN85 833 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 TTI2Q6NXR4 508 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 ZNF662Q6ZS27 426 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 SMYD4Q8IYR2 804 aaPredicted RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 NLGN1Q8N2Q7 840 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 FEZ1Q99689 392 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 QTRT2Q9H974 415 aaKnown RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 RIC8AQ9NPQ8 531 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 RBL2Q08999 1139 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 ZNF543Q08ER8 600 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 NOC3LQ8WTT2 800 aaKnown RBP12.59□□□□□ -0.39
MSH3-201ENST00000265081 MBOAT7Q96N66 472 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 TTYH3Q9C0H2 523 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 BLZF1Q9H2G9 400 aa12.59□□□□□ -0.39
MSH3-201ENST00000265081 SMCO2A6NFE2 343 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 PPP1R11O60927 126 aaPredicted RBP12.58□□□□□ -0.39
MSH3-201ENST00000265081 EEF1GP26641 437 aaKnown RBP12.58□□□□□ -0.39
MSH3-201ENST00000265081 PPP1R2P41236 205 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 STAT6P42226 847 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 GOLGA8FQ08AF8 430 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 GOLGA8DPQ0D2H9 430 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 KMT5BQ4FZB7 885 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 MEX3CQ5U5Q3 659 aaKnown RBP12.58□□□□□ -0.39
MSH3-201ENST00000265081 USP17L2Q6R6M4 530 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 NELFBQ8WX92 580 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 IDI2Q9BXS1 227 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 DNAI1Q9UI46 699 aa12.58□□□□□ -0.39
MSH3-201ENST00000265081 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.58□□□□□ -0.39
MSH3-201ENST00000265081 ALDH1B1P30837 517 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 MAP3K9P80192 1104 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 PDIA5Q14554 519 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 TMEM119Q4V9L6 283 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 COL23A1Q86Y22 540 aaPredicted RBP12.58□□□□□ -0.4
MSH3-201ENST00000265081 PDCL2Q8N4E4 241 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 CRYGNQ8WXF5 182 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 DHTKD1Q96HY7 919 aaPredicted RBP12.58□□□□□ -0.4
MSH3-201ENST00000265081 PIGSQ96S52 555 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 TTLL1O95922 423 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 AKR1B1P15121 316 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 COPB1P53618 953 aaKnown RBP12.58□□□□□ -0.4
MSH3-201ENST00000265081 PPP4R3BQ5MIZ7 849 aa12.58□□□□□ -0.4
MSH3-201ENST00000265081 SYT10Q6XYQ8 523 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms