RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 KLK7P49862 253 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 TCP11X2Q5H9J9 407 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 PDXDC2PQ6P474 469 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 STAG2Q8N3U4 1231 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 CCDC102AQ96A19 550 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 BSDC1Q9NW68 430 aaPredicted RBP11.31□□□□□ -0.6
LIG3-201ENST00000262327 NID2Q14112 1375 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 TTC26A0AVF1 554 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 RPN1P04843 607 aaKnown RBP11.31□□□□□ -0.6
LIG3-201ENST00000262327 SERPINB2P05120 415 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 PRDX5P30044 214 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 BAG6P46379 1132 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 NAPGQ99747 312 aaPredicted RBP11.31□□□□□ -0.6
LIG3-201ENST00000262327 FAN1Q9Y2M0 1017 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 COL1A1P02452 1464 aaPredicted RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 TSPY2A6NKD2 308 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 NKRFO15226 690 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG3-201ENST00000262327 SCG2P13521 617 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 STAT6P42226 847 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 PRR5LQ6MZQ0 368 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 CEP112Q8N8E3 955 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 CELF1Q92879 486 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 NAA15Q9BXJ9 866 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 REXO2Q9Y3B8 237 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 CTAGE15A4D2H0 777 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 POLRMTO00411 1230 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 CTAGE8P0CG41 777 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 MRPS25P82663 173 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 RAD51AP2Q09MP3 1159 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 EZH2Q15910 746 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 TYW1BQ6NUM6 668 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 CTAGE6Q86UF2 777 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 CTAGE4Q8IX94 777 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 GSPT2Q8IYD1 628 aaKnown RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 DYNLL2Q96FJ2 89 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 FAM84BQ96KN1 310 aaPredicted RBP11.3□□□□□ -0.6
LIG3-201ENST00000262327 TMEM60Q9H2L4 133 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 PLEKHA4Q9H4M7 779 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 RSPH14Q9UHP6 348 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 LCMT1Q9UIC8 334 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 MYH6P13533 1939 aa11.3□□□□□ -0.6
LIG3-201ENST00000262327 PARP1P09874 1014 aaKnown RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 USP17L8P0C7I0 530 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 MECOMQ03112 1051 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 EN1Q05925 392 aaPredicted RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 ZSCAN26Q16670 478 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 CYP26C1Q6V0L0 522 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 EP400NLQ6ZTU2 488 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 CCDC125Q86Z20 511 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 IRF2BP1Q8IU81 584 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 TMTC1Q8IUR5 882 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 STK32BQ9NY57 414 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 EPN1Q9Y6I3 576 aaPredicted RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 ATP8B1O43520 1251 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 BRD3Q15059 726 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 INF2Q27J81 1249 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 HPS3Q969F9 1004 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 GNL3LQ9NVN8 582 aaKnown RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 LIMA1Q9UHB6 759 aaKnown RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 TTF2Q9UNY4 1162 aaKnown RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 DUSP10Q9Y6W6 482 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 QSER1Q2KHR3 1735 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 CASZ1Q86V15 1759 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 ANKRD65E5RJM6 399 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 MAP2K7O14733 419 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 GOLGA8HP0CJ92 632 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 RPS8P62241 208 aaKnown RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 DDR1Q08345 913 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 GPS2Q13227 327 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 SLC15A2Q16348 729 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 CAVIN4Q5BKX8 364 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 FOXR1Q6PIV2 292 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 PCMTD1Q96MG8 357 aaPredicted RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 AGPAT5Q9NUQ2 364 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 RBM28Q9NW13 759 aaKnown RBP11.29□□□□□ -0.6
LIG3-201ENST00000262327 RWDD2AQ9UIY3 292 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 ANAPC4Q9UJX5 808 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 MYO6Q9UM54 1294 aa11.29□□□□□ -0.6
LIG3-201ENST00000262327 TAF1P21675 1872 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 LRRIQ3A6PVS8 624 aaPredicted RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 B4DLN1 442 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 NDUFA10O95299 355 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 ATP1A1P05023 1023 aaKnown RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 CYP27A1Q02318 531 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 HDXQ7Z353 690 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 TXLNBQ8N3L3 684 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 ANKRD20A12PQ8NF67 263 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 LRRC15Q8TF66 581 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 TRIM47Q96LD4 638 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 DCP1AQ9NPI6 582 aaPredicted RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 MCM9Q9NXL9 1143 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 L1RE1Q9UN81 338 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 ARAP2Q8WZ64 1704 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 GOLGB1Q14789 3259 aaKnown RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 KLRG2A4D1S0 409 aaPredicted RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 USP17L3A6NCW0 530 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 USP17L4A6NCW7 530 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 TRIM66O15016 1216 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 ZNF185O15231 689 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms