RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 MYADML2A6NDP7 307 aa26.19■■□□□ 1.78
VTI1B-201ENST00000216456 SDSP20132 328 aa26.19■■□□□ 1.78
VTI1B-201ENST00000216456 TBC1D10CQ8IV04 446 aa26.19■■□□□ 1.78
VTI1B-201ENST00000216456 PRDM5Q9NQX1 630 aaPredicted RBP26.19■■□□□ 1.78
VTI1B-201ENST00000216456 PRR12Q9ULL5 1215 aa26.19■■□□□ 1.78
VTI1B-201ENST00000216456 LAMA2P24043 3122 aaKnown RBP26.19■■□□□ 1.78
VTI1B-201ENST00000216456 AKR1A1P14550 325 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 SLC16A2P36021 539 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 NOVP48745 357 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 RCSD1Q6JBY9 416 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 MAMDC4Q6UXC1 1216 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 RNF146Q9NTX7 359 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.18■■□□□ 1.78
VTI1B-201ENST00000216456 PHF24Q9UPV7 400 aa26.18■■□□□ 1.78
VTI1B-201ENST00000216456 FRMPD2Q68DX3 1309 aaPredicted RBP26.17■■□□□ 1.78
VTI1B-201ENST00000216456 ADAMTS4O75173 837 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 PTGS1P23219 599 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 OAZ1P54368 228 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 SNX17Q15036 470 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 CCDC96Q2M329 555 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 MUM1L1Q5H9M0 696 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 Q7L0L9 218 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.17■■□□□ 1.78
VTI1B-201ENST00000216456 FAM160B2Q86V87 743 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 CHST13Q8NET6 341 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 CHURC1Q8WUH1 139 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 PURBQ96QR8 312 aaKnown RBP26.17■■□□□ 1.78
VTI1B-201ENST00000216456 TMEM47Q9BQJ4 181 aa26.17■■□□□ 1.78
VTI1B-201ENST00000216456 A1CFQ9NQ94 594 aaKnown RBP26.17■■□□□ 1.78
VTI1B-201ENST00000216456 SUPT16HQ9Y5B9 1047 aaKnown RBP26.17■■□□□ 1.78
VTI1B-201ENST00000216456 SYNGAP1Q96PV0 1343 aa26.16■■□□□ 1.78
VTI1B-201ENST00000216456 SYNRGQ9UMZ2 1314 aa26.16■■□□□ 1.78
VTI1B-201ENST00000216456 ALAS1P13196 640 aa26.16■■□□□ 1.78
VTI1B-201ENST00000216456 ARMCX2Q7L311 632 aa26.16■■□□□ 1.78
VTI1B-201ENST00000216456 ASTN1O14525 1302 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 MCM3APO60318 1980 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 A0A1W2PQ45 241 aaPredicted RBP26.15■■□□□ 1.78
VTI1B-201ENST00000216456 A0A1W2PQY0 241 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 TRIM43BA6NCK2 446 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 SOWAHBA6NEL2 793 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 IRX6P78412 446 aaPredicted RBP26.15■■□□□ 1.78
VTI1B-201ENST00000216456 TLE2Q04725 743 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 AAMPQ13685 434 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 ACVR2BQ13705 512 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 CCDC144CPQ8IYA2 1237 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 TRIM43Q96BQ3 446 aaPredicted RBP26.15■■□□□ 1.78
VTI1B-201ENST00000216456 TRERF1Q96PN7 1200 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 ACAD9Q9H845 621 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 GPCPD1Q9NPB8 672 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 PDLIM7Q9NR12 457 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 FBXO40Q9UH90 709 aa26.15■■□□□ 1.78
VTI1B-201ENST00000216456 NEDD4P46934 1319 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 ITGB8P26012 769 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 LRIT3Q3SXY7 679 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 CWC27Q6UX04 472 aaKnown RBP26.14■■□□□ 1.78
VTI1B-201ENST00000216456 RNF180Q86T96 592 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 MSL3Q8N5Y2 521 aaKnown RBP26.14■■□□□ 1.78
VTI1B-201ENST00000216456 FAM133AQ8N9E0 248 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 LBHD1Q9BQE6 289 aaPredicted RBP26.14■■□□□ 1.78
VTI1B-201ENST00000216456 KATNBL1Q9H079 304 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 OSBPL3Q9H4L5 887 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 FAM184BQ9ULE4 1060 aa26.14■■□□□ 1.78
VTI1B-201ENST00000216456 POTEB2H3BUK9 544 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 CCDC144BQ3MJ40 725 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 ZNF467Q7Z7K2 595 aaPredicted RBP26.13■■□□□ 1.77
VTI1B-201ENST00000216456 BADQ92934 168 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 ZKSCAN3Q9BRR0 538 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 IL25Q9H293 177 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 LTBP2Q14767 1821 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 COL6A3P12111 3177 aa26.13■■□□□ 1.77
VTI1B-201ENST00000216456 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.12■■□□□ 1.77
VTI1B-201ENST00000216456 PLA2G6O60733 806 aa26.12■■□□□ 1.77
VTI1B-201ENST00000216456 AKNAD1Q5T1N1 836 aa26.12■■□□□ 1.77
VTI1B-201ENST00000216456 KLHDC9Q8NEP7 349 aa26.12■■□□□ 1.77
VTI1B-201ENST00000216456 PRKAG2Q9UGJ0 569 aa26.12■■□□□ 1.77
VTI1B-201ENST00000216456 ZMYM6O95789 1325 aa26.12■■□□□ 1.77
VTI1B-201ENST00000216456 FDX1P10109 184 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 TOP1P11387 765 aaKnown RBP26.11■■□□□ 1.77
VTI1B-201ENST00000216456 PDE4AP27815 886 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 KCNA10Q16322 511 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 PPP4R3BQ5MIZ7 849 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 TMEM63BQ5T3F8 832 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 CCSAPQ6IQ19 270 aaPredicted RBP26.11■■□□□ 1.77
VTI1B-201ENST00000216456 DCAF4Q8WV16 495 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 CCPG1Q9ULG6 757 aa26.11■■□□□ 1.77
VTI1B-201ENST00000216456 PQBP1O60828 265 aaKnown RBP26.1■■□□□ 1.77
VTI1B-201ENST00000216456 ACLYP53396 1101 aa26.1■■□□□ 1.77
VTI1B-201ENST00000216456 C9orf50Q5SZB4 431 aa26.1■■□□□ 1.77
VTI1B-201ENST00000216456 MFSD6Q6ZSS7 791 aa26.1■■□□□ 1.77
VTI1B-201ENST00000216456 TCP11L1Q9NUJ3 509 aa26.1■■□□□ 1.77
VTI1B-201ENST00000216456 DUSP11O75319 330 aaKnown RBP26.09■■□□□ 1.77
VTI1B-201ENST00000216456 SYDE2Q5VT97 1194 aa26.09■■□□□ 1.77
VTI1B-201ENST00000216456 NSMFQ6X4W1 530 aa26.09■■□□□ 1.77
VTI1B-201ENST00000216456 RANBP17Q9H2T7 1088 aaKnown RBP26.09■■□□□ 1.77
VTI1B-201ENST00000216456 CPVLQ9H3G5 476 aa26.09■■□□□ 1.77
VTI1B-201ENST00000216456 ABHD16BQ9H3Z7 469 aa26.09■■□□□ 1.77
VTI1B-201ENST00000216456 DIAPH3Q9NSV4 1193 aa26.09■■□□□ 1.77
VTI1B-201ENST00000216456 C6orf222P0C671 652 aaPredicted RBP26.08■■□□□ 1.77
VTI1B-201ENST00000216456 PDHBP11177 359 aa26.08■■□□□ 1.77
VTI1B-201ENST00000216456 SHHQ15465 462 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms