RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 BAIAP2L1Q9UHR4 511 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 GOLGA8OA6NCC3 632 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 GOLGA8NF8WBI6 632 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PCP11498 1178 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SLC16A2P36021 539 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PLA2G4AP47712 749 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TBC1D9Q6ZT07 1266 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MCF2L2Q86YR7 1114 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 NELFCDQ8IXH7 590 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CCT7Q99832 543 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 EPB41L4AQ9HCS5 686 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 FANCLQ9NW38 375 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 GOLGA8QA0A0J9YX86 632 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 RASGRP1O95267 797 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 C6orf163Q5TEZ5 329 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CATSPER4Q7RTX7 472 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 FCHSD1Q86WN1 690 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 HERPUD2Q9BSE4 406 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC113Q9H0I3 377 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PLEKHA4Q9H4M7 779 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 BRD9Q9H8M2 597 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 APPL1Q9UKG1 709 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 STRIP2Q9ULQ0 834 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 HNRNPCL2B2RXH8 293 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 HNRNPCL1O60812 293 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ESRRAP11474 423 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PCK1P35558 622 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 TRPC1P48995 793 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MYBPC3Q14896 1274 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SH3KBP1Q96B97 665 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SLC26A6Q9BXS9 759 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 DDX28Q9NUL7 540 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 HYPKQ9NX55 129 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 TMOD3Q9NYL9 352 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 IQCA1LA6NCM1 817 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ZMYND10O75800 440 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 KRT17Q04695 432 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 LRP8Q14114 963 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 FSCBQ5H9T9 825 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NYAP1Q6ZVC0 841 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SLC7A3Q8WY07 619 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SKA1Q96BD8 255 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GLT8D2Q9H1C3 349 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 IQANK1A0A1B0GTG1 560 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 FSD2A1L4K1 749 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 KCNH1O95259 989 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 TBL3Q12788 808 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 RASA2Q15283 850 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PRPF40BQ6NWY9 871 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD13BQ86YJ7 626 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 DEPDC4Q8N2C3 294 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 RPRD1BQ9NQG5 326 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SH3GLB2Q9NR46 395 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ATP6V1HQ9UI12 483 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CYTH4Q9UIA0 394 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 AGTPBP1Q9UPW5 1226 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NUTM2BA6NNL0 878 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NUTM2EB1AL46 878 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NFKBIAP25963 317 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 LONP1P36776 959 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GPSM2P81274 684 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 C15orf59Q2T9L4 293 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MDH1BQ5I0G3 518 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NUTM2DQ5VT03 806 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANGPTL8Q6UXH0 198 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NUTM2AQ8IVF1 878 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ARL6IP6Q8N6S5 226 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 EZH1Q92800 747 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 C8orf4Q9NR00 106 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC169A6NNP5 214 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PI4K2BG5E9Z4 385 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SIN3BO75182 1162 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 HNF1BP35680 557 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PLD1Q13393 1074 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PI4K2BQ8TCG2 481 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 LZICQ8WZA0 190 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 RUNDC1Q96C34 613 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 TUBA8Q9NY65 449 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 K7ELQ4 463 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MEN1O00255 615 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ST13P50502 369 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SNX1Q13596 522 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 UNC5DQ6UXZ4 953 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANAPC16Q96DE5 110 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC28BQ9BUN5 200 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 USP40Q9NVE5 1235 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ZRANB1Q9UGI0 708 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SUN2Q9UH99 717 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 LRRD1A4D1F6 860 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SEC24DO94855 1032 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GAS8O95995 478 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GNAT1P11488 350 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ADSLP30566 484 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ALFQ53S48 1182 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GLYCTKQ8IVS8 523 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SEPT1Q8WYJ6 367 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CNKSR1Q969H4 720 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 UTP14AQ9BVJ6 771 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ACAT2Q9BWD1 397 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms