RNA–Protein interactions for RNA: ENST00000639809.1

SPIN3-229, Transcript of spindlin family member 3, human

TSL 5

Gene SPIN3, Length 1,118 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIN3-229	ENST00000639809	ZBED4	O75132	1171 aa		18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	FDX1	P10109	184 aa		18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	SNRNP48	Q6IEG0	339 aa	Known RBP	18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	ZNF444	Q8N0Y2	327 aa	Predicted RBP	18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	MKL1	Q969V6	931 aa		18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	TRIM43	Q96BQ3	446 aa	Predicted RBP	18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	DDX11	Q96FC9	970 aa		18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	FBXO40	Q9UH90	709 aa		18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	FAM184B	Q9ULE4	1060 aa		18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	CTDP1	Q9Y5B0	961 aa	Predicted RBP	18.87	■□□□□ 0.61
SPIN3-229	ENST00000639809	PLXNA1	Q9UIW2	1896 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	DNAJC25-GNG10	A0A024R161	153 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	TMEM265	A0A087WTH1	108 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809		A0A1W2PQ45	241 aa	Predicted RBP	18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809		A0A1W2PQY0	241 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	KIAA0355	O15063	1070 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	RNF113A	O15541	343 aa	Known RBP	18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	NDUFB10	O96000	172 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	PGK1	P00558	417 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	OAZ1	P54368	228 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	ANKRD33	Q7Z3H0	272 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	OSBP2	Q969R2	916 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	FEM1B	Q9UK73	627 aa		18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	LAMA2	P24043	3122 aa	Known RBP	18.86	■□□□□ 0.61
SPIN3-229	ENST00000639809	SMCHD1	A6NHR9	2005 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	IGKV6D-41	A0A0C4DH26	115 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	MINDY4B	A8MYZ0	360 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	SMARCA5	O60264	1052 aa	Predicted RBP	18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	ADAMTS4	O75173	837 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	TAL1	P17542	331 aa	Predicted RBP	18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	TDO2	P48775	406 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	PPP4R3B	Q5MIZ7	849 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	C9orf50	Q5SZB4	431 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	SH3RF1	Q7Z6J0	888 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	GMCL1P1	Q8NEA9	526 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	CHST13	Q8NET6	341 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	DCTPP1	Q9H773	170 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	CLIP2	Q9UDT6	1046 aa		18.85	■□□□□ 0.61
SPIN3-229	ENST00000639809	MROH7	Q68CQ1	1323 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	DCDC2C	A8MYV0	355 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	PATL2	C9JE40	543 aa	Known RBP	18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	GPAA1	O43292	621 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	DUSP11	O75319	330 aa	Known RBP	18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	TTLL1	O95922	423 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	CST5	P28325	142 aa	Predicted RBP	18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	KLHDC9	Q8NEP7	349 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	NUP88	Q99567	741 aa	Predicted RBP	18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	NACAP1	Q9BZK3	213 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	SEMA6B	Q9H3T3	888 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	SPC25	Q9HBM1	224 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	SLC38A10	Q9HBR0	1119 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	STARD7	Q9NQZ5	370 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	MTMR4	Q9NYA4	1195 aa		18.84	■□□□□ 0.61
SPIN3-229	ENST00000639809	PLIN4	Q96Q06	1357 aa		18.83	■□□□□ 0.61
SPIN3-229	ENST00000639809	ELP1	O95163	1332 aa		18.83	■□□□□ 0.61
SPIN3-229	ENST00000639809	SYNRG	Q9UMZ2	1314 aa		18.83	■□□□□ 0.61
SPIN3-229	ENST00000639809	SLC3A2	P08195	630 aa	Known RBP	18.83	■□□□□ 0.6
SPIN3-229	ENST00000639809	RAG1	P15918	1043 aa		18.83	■□□□□ 0.6
SPIN3-229	ENST00000639809	ACLY	P53396	1101 aa		18.83	■□□□□ 0.6
SPIN3-229	ENST00000639809	PCSK9	Q8NBP7	692 aa	Known RBP	18.83	■□□□□ 0.6
SPIN3-229	ENST00000639809	ABHD16B	Q9H3Z7	469 aa		18.83	■□□□□ 0.6
SPIN3-229	ENST00000639809	TMEM39A	Q9NV64	488 aa		18.83	■□□□□ 0.6
SPIN3-229	ENST00000639809	TTC41P	Q6P2S7	1318 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	ERC2	O15083	957 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	PQBP1	O60828	265 aa	Known RBP	18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	SNAI1	O95863	264 aa	Predicted RBP	18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	APP	P05067	770 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	FPGS	Q05932	587 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	PDE4B	Q07343	736 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	ACVR2B	Q13705	512 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	CEP95	Q96GE4	821 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	FAM161B	Q96MY7	647 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	CDX2	Q99626	313 aa	Predicted RBP	18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	RIPK3	Q9Y572	518 aa		18.82	■□□□□ 0.6
SPIN3-229	ENST00000639809	KCNA10	Q16322	511 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	CCSAP	Q6IQ19	270 aa	Predicted RBP	18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	CCDC174	Q6PII3	467 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	CPXCR1	Q8N123	301 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	ANKRD35	Q8N283	1001 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	NEDD1	Q8NHV4	660 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	KIFC2	Q96AC6	838 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	RNPC3	Q96LT9	517 aa	Known RBP	18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	GLT1D1	Q96MS3	346 aa		18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	ZHX1	Q9UKY1	873 aa	Predicted RBP	18.81	■□□□□ 0.6
SPIN3-229	ENST00000639809	BMP3	P12645	472 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	ITGB8	P26012	769 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	FAAP100	Q0VG06	881 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	C20orf194	Q5TEA3	1177 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	FAM160B2	Q86V87	743 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	IFNL3	Q8IZI9	196 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	CHURC1	Q8WUH1	139 aa		18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	UPF3A	Q9H1J1	476 aa	Known RBP	18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	RAVER2	Q9HCJ3	691 aa	Known RBP	18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	18.8	■□□□□ 0.6
SPIN3-229	ENST00000639809	UNC80	Q8N2C7	3258 aa		18.79	■□□□□ 0.6
SPIN3-229	ENST00000639809	TIMP1	P01033	207 aa		18.79	■□□□□ 0.6
SPIN3-229	ENST00000639809	TSPY3	P0CV98	308 aa		18.79	■□□□□ 0.6
SPIN3-229	ENST00000639809	TSPY8	P0CW00	308 aa		18.79	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms