RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DDX11Q96FC9 970 aa23.26■■□□□ 1.31
CLN3-262ENST00000637699 TEX13BQ9BXU2 312 aa23.26■■□□□ 1.31
CLN3-262ENST00000637699 STARD7Q9NQZ5 370 aa23.26■■□□□ 1.31
CLN3-262ENST00000637699 ARPP21Q9UBL0 812 aaPredicted RBP23.26■■□□□ 1.31
CLN3-262ENST00000637699 RIPK3Q9Y572 518 aa23.26■■□□□ 1.31
CLN3-262ENST00000637699 ROBO3Q96MS0 1386 aa23.26■■□□□ 1.31
CLN3-262ENST00000637699 F5H6K3 240 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 FOSL2P15408 326 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 FPGSQ05932 587 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 KLRC3Q07444 240 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 TSEN34Q9BSV6 310 aaKnown RBP23.25■■□□□ 1.31
CLN3-262ENST00000637699 MKNK2Q9HBH9 465 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 ZHX1Q9UKY1 873 aaPredicted RBP23.25■■□□□ 1.31
CLN3-262ENST00000637699 FAM184BQ9ULE4 1060 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 MYH7P12883 1935 aa23.25■■□□□ 1.31
CLN3-262ENST00000637699 SMARCA5O60264 1052 aaPredicted RBP23.24■■□□□ 1.31
CLN3-262ENST00000637699 SNAI1O95863 264 aaPredicted RBP23.24■■□□□ 1.31
CLN3-262ENST00000637699 RASA1P20936 1047 aa23.24■■□□□ 1.31
CLN3-262ENST00000637699 FAAP100Q0VG06 881 aa23.24■■□□□ 1.31
CLN3-262ENST00000637699 CPXCR1Q8N123 301 aa23.24■■□□□ 1.31
CLN3-262ENST00000637699 NUP133Q8WUM0 1156 aa23.24■■□□□ 1.31
CLN3-262ENST00000637699 STRBPQ96SI9 672 aaKnown RBP23.24■■□□□ 1.31
CLN3-262ENST00000637699 SYNRGQ9UMZ2 1314 aa23.24■■□□□ 1.31
CLN3-262ENST00000637699 DCDC2CA8MYV0 355 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 MINDY4BA8MYZ0 360 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 NDUFB10O96000 172 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 KCNA10Q16322 511 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 ANKRD33Q7Z3H0 272 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 MSL3Q8N5Y2 521 aaKnown RBP23.23■■□□□ 1.31
CLN3-262ENST00000637699 PRPF38AQ8NAV1 312 aaKnown RBP23.23■■□□□ 1.31
CLN3-262ENST00000637699 LRRCC1Q9C099 1032 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 NYAP2Q9P242 653 aa23.23■■□□□ 1.31
CLN3-262ENST00000637699 GSG1L2A8MUP6 293 aa23.22■■□□□ 1.31
CLN3-262ENST00000637699 SBK1Q52WX2 424 aa23.22■■□□□ 1.31
CLN3-262ENST00000637699 KLHDC9Q8NEP7 349 aa23.22■■□□□ 1.31
CLN3-262ENST00000637699 TOX2Q96NM4 488 aa23.22■■□□□ 1.31
CLN3-262ENST00000637699 CLIP2Q9UDT6 1046 aa23.22■■□□□ 1.31
CLN3-262ENST00000637699 CTDP1Q9Y5B0 961 aaPredicted RBP23.22■■□□□ 1.31
CLN3-262ENST00000637699 SYNGAP1Q96PV0 1343 aa23.22■■□□□ 1.31
CLN3-262ENST00000637699 DNAJC25-GNG10A0A024R161 153 aa23.21■■□□□ 1.31
CLN3-262ENST00000637699 MYADML2A6NDP7 307 aa23.21■■□□□ 1.31
CLN3-262ENST00000637699 MOXD2PA6NHM9 499 aa23.21■■□□□ 1.31
CLN3-262ENST00000637699 ZBED4O75132 1171 aa23.21■■□□□ 1.31
CLN3-262ENST00000637699 IRX5P78411 483 aaPredicted RBP23.21■■□□□ 1.31
CLN3-262ENST00000637699 MAMDC4Q6UXC1 1216 aa23.21■■□□□ 1.31
CLN3-262ENST00000637699 KIFC2Q96AC6 838 aa23.21■■□□□ 1.31
CLN3-262ENST00000637699 CHMP4BQ9H444 224 aaKnown RBP23.21■■□□□ 1.31
CLN3-262ENST00000637699 RAVER2Q9HCJ3 691 aaKnown RBP23.21■■□□□ 1.31
CLN3-262ENST00000637699 GREB1LQ9C091 1923 aaPredicted RBP23.2■■□□□ 1.3
CLN3-262ENST00000637699 TMEM265A0A087WTH1 108 aa23.2■■□□□ 1.3
CLN3-262ENST00000637699 DUSP11O75319 330 aaKnown RBP23.2■■□□□ 1.3
CLN3-262ENST00000637699 ACVR2BQ13705 512 aa23.2■■□□□ 1.3
CLN3-262ENST00000637699 CCSAPQ6IQ19 270 aaPredicted RBP23.2■■□□□ 1.3
CLN3-262ENST00000637699 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.19■■□□□ 1.3
CLN3-262ENST00000637699 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.19■■□□□ 1.3
CLN3-262ENST00000637699 TIMP1P01033 207 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 C6orf222P0C671 652 aaPredicted RBP23.19■■□□□ 1.3
CLN3-262ENST00000637699 GRIN2CQ14957 1233 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 ANKRD35Q8N283 1001 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 OSBP2Q969R2 916 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 VTI1AQ96AJ9 217 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 GLT1D1Q96MS3 346 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 ECHDC1Q9NTX5 307 aa23.19■■□□□ 1.3
CLN3-262ENST00000637699 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.19■■□□□ 1.3
CLN3-262ENST00000637699 SPTBN5Q9NRC6 3674 aaKnown RBP23.19■■□□□ 1.3
CLN3-262ENST00000637699 ATP2A1O14983 1001 aa23.18■■□□□ 1.3
CLN3-262ENST00000637699 PRDM1O75626 825 aa23.18■■□□□ 1.3
CLN3-262ENST00000637699 DNAJB2P25686 324 aa23.18■■□□□ 1.3
CLN3-262ENST00000637699 GIMAP6Q6P9H5 292 aa23.18■■□□□ 1.3
CLN3-262ENST00000637699 ZNF467Q7Z7K2 595 aaPredicted RBP23.18■■□□□ 1.3
CLN3-262ENST00000637699 ZNF444Q8N0Y2 327 aaPredicted RBP23.18■■□□□ 1.3
CLN3-262ENST00000637699 TBX21Q9UL17 535 aa23.18■■□□□ 1.3
CLN3-262ENST00000637699 IGKV6D-41A0A0C4DH26 115 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 ADCY6O43306 1168 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 ASGR1P07306 291 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 CCDC144BQ3MJ40 725 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 KBTBD3Q8NAB2 608 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.17■■□□□ 1.33e-6■□□□□ 10.1
CLN3-262ENST00000637699 ABHD16BQ9H3Z7 469 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 SPC25Q9HBM1 224 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 SLC38A10Q9HBR0 1119 aa23.17■■□□□ 1.3
CLN3-262ENST00000637699 ELP1O95163 1332 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 APPP05067 770 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 TDO2P48775 406 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 MFSD5Q6N075 450 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 LRRC47Q8N1G4 583 aaKnown RBP23.16■■□□□ 1.3
CLN3-262ENST00000637699 PCSK9Q8NBP7 692 aaKnown RBP23.16■■□□□ 1.3
CLN3-262ENST00000637699 APPBP2Q92624 585 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 CEP95Q96GE4 821 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 FGD4Q96M96 766 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 EPB41L4AQ9HCS5 686 aaPredicted RBP23.16■■□□□ 1.3
CLN3-262ENST00000637699 FEM1BQ9UK73 627 aa23.16■■□□□ 1.3
CLN3-262ENST00000637699 MROH7Q68CQ1 1323 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 CST5P28325 142 aaPredicted RBP23.15■■□□□ 1.3
CLN3-262ENST00000637699 CDK7P50613 346 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 GNASQ5JWF2 1037 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 TSHZ3Q63HK5 1081 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 ARMCX2Q7L311 632 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 MKL1Q969V6 931 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 TIFAQ96CG3 184 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms