RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CD320Q9NPF0 282 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 SLC4A7Q9Y6M7 1214 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 EPOPA6NHQ4 379 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 PI4K2BG5E9Z4 385 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 ADCY6O43306 1168 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 POU3F3P20264 500 aaPredicted RBP17.72■□□□□ 0.43
CLN3-249ENST00000636685 CCL23P55773 120 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 GABPAQ06546 454 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 G3BP1Q13283 466 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLN3-249ENST00000636685 ALDH1L2Q3SY69 923 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 CLEC10AQ8IUN9 316 aa17.72■□□□□ 0.43
CLN3-249ENST00000636685 PCSK9Q8NBP7 692 aaKnown RBP17.72■□□□□ 0.43
CLN3-249ENST00000636685 NOB1Q9ULX3 412 aaKnown RBP17.72■□□□□ 0.43
CLN3-249ENST00000636685 IDH1O75874 414 aaKnown RBP17.71■□□□□ 0.43
CLN3-249ENST00000636685 CCDC158Q5M9N0 1113 aa17.71■□□□□ 0.43
CLN3-249ENST00000636685 SIAH1Q8IUQ4 282 aa17.71■□□□□ 0.43
CLN3-249ENST00000636685 HIPK3Q9H422 1215 aa17.71■□□□□ 0.43
CLN3-249ENST00000636685 FBXO28Q9NVF7 368 aa17.71■□□□□ 0.43
CLN3-249ENST00000636685 ZBBXA8MT70 800 aa17.7■□□□□ 0.42
CLN3-249ENST00000636685 POLR3DP05423 398 aaPredicted RBP17.7■□□□□ 0.42
CLN3-249ENST00000636685 STAT3P40763 770 aa17.7■□□□□ 0.42
CLN3-249ENST00000636685 GNASQ5JWF2 1037 aa17.7■□□□□ 0.42
CLN3-249ENST00000636685 MAGEB6Q8N7X4 407 aa17.7■□□□□ 0.42
CLN3-249ENST00000636685 HLA-CQ95604 372 aa17.7■□□□□ 0.42
CLN3-249ENST00000636685 UPF3AQ9H1J1 476 aaKnown RBP17.7■□□□□ 0.42
CLN3-249ENST00000636685 ADAMTS5Q9UNA0 930 aa17.7■□□□□ 0.42
CLN3-249ENST00000636685 CA3P07451 260 aa17.69■□□□□ 0.42
CLN3-249ENST00000636685 ATP2A2P16615 1042 aaKnown RBP17.69■□□□□ 0.42
CLN3-249ENST00000636685 GJA9P57773 515 aa17.69■□□□□ 0.42
CLN3-249ENST00000636685 TNNI3KQ59H18 835 aa17.69■□□□□ 0.42
CLN3-249ENST00000636685 MSL3Q8N5Y2 521 aaKnown RBP17.69■□□□□ 0.42
CLN3-249ENST00000636685 VCPKMTQ9H867 229 aa17.69■□□□□ 0.42
CLN3-249ENST00000636685 SPC25Q9HBM1 224 aa17.69■□□□□ 0.42
CLN3-249ENST00000636685 FPGT-TNNI3KV9GXZ4 949 aa17.69■□□□□ 0.42
CLN3-249ENST00000636685 PNMA6EA0A0J9YXQ4 647 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 WDR46O15213 610 aaKnown RBP17.68■□□□□ 0.42
CLN3-249ENST00000636685 IGSF3O75054 1194 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 ACVR2BQ13705 512 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 SCN5AQ14524 2016 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 TMEM179Q6ZVK1 233 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 CERS3Q8IU89 383 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 VWCEQ96DN2 955 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 API5Q9BZZ5 524 aaKnown RBP17.68■□□□□ 0.42
CLN3-249ENST00000636685 WNT8AQ9H1J5 351 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 ZNF214Q9UL59 606 aaPredicted RBP17.68■□□□□ 0.42
CLN3-249ENST00000636685 TMX2Q9Y320 296 aa17.68■□□□□ 0.42
CLN3-249ENST00000636685 PRR33A8MZF0 331 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 VWA5AO00534 786 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 CTAGE5O15320 804 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 GNAI3P08754 354 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 BEX3Q00994 111 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 CCDC144BQ3MJ40 725 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 TMEM67Q5HYA8 995 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 MAMDC4Q6UXC1 1216 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 FAM9BQ8IZU0 186 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 REPS2Q8NFH8 660 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 ZNF512BQ96KM6 892 aaPredicted RBP17.67■□□□□ 0.42
CLN3-249ENST00000636685 UIMC1Q96RL1 719 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 NOC4LQ9BVI4 516 aaKnown RBP17.67■□□□□ 0.42
CLN3-249ENST00000636685 ARHGEF10LQ9HCE6 1279 aa17.67■□□□□ 0.42
CLN3-249ENST00000636685 E9PSI1 815 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 ARHGEF15O94989 841 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 NHLH1Q02575 133 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 ICA1Q05084 483 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 TTLL4Q14679 1199 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 RPUSD2Q8IZ73 545 aaKnown RBP17.66■□□□□ 0.42
CLN3-249ENST00000636685 SLC43A3Q8NBI5 491 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 ARNTL2Q8WYA1 636 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 DDX11Q96FC9 970 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 SCLYQ96I15 445 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 TRPV6Q9H1D0 765 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 GPR108Q9NPR9 543 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 MCM9Q9NXL9 1143 aa17.66■□□□□ 0.42
CLN3-249ENST00000636685 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.66■□□□□ 0.42
CLN3-249ENST00000636685 COL4A4P53420 1690 aaPredicted RBP17.65■□□□□ 0.42
CLN3-249ENST00000636685 CYP2D6P10635 497 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 AKR1B1P15121 316 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 COPB2P35606 906 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 CXCL17Q6UXB2 119 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 RIOK1Q9BRS2 568 aaKnown RBP17.65■□□□□ 0.42
CLN3-249ENST00000636685 SH2D4AQ9H788 454 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 PPP1R9AQ9ULJ8 1098 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 WDFY4Q6ZS81 3184 aa17.65■□□□□ 0.42
CLN3-249ENST00000636685 DNAJC25-GNG10A0A024R161 153 aa17.64■□□□□ 0.41
CLN3-249ENST00000636685 DYNLL2Q96FJ2 89 aa17.64■□□□□ 0.41
CLN3-249ENST00000636685 ANTXR1Q9H6X2 564 aa17.64■□□□□ 0.41
CLN3-249ENST00000636685 TLR7Q9NYK1 1049 aaKnown RBP17.64■□□□□ 0.41
CLN3-249ENST00000636685 GRIN2DO15399 1336 aa17.64■□□□□ 0.41
CLN3-249ENST00000636685 B4GALT4O60513 344 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 TAP1Q03518 808 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 SLFN5Q08AF3 891 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 GRB10Q13322 594 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 ITGA7Q13683 1181 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 AGBL1Q96MI9 1066 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 ABHD16BQ9H3Z7 469 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 DBNLQ9UJU6 430 aaKnown RBP17.63■□□□□ 0.41
CLN3-249ENST00000636685 RIPK3Q9Y572 518 aa17.63■□□□□ 0.41
CLN3-249ENST00000636685 SLC4A3P48751 1232 aa17.62■□□□□ 0.41
CLN3-249ENST00000636685 FAM83BQ5T0W9 1011 aa17.62■□□□□ 0.41
CLN3-249ENST00000636685 SNRNP48Q6IEG0 339 aaKnown RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms