RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 SNAPC2Q13487 334 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 PKN1Q16512 942 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 SYDE2Q5VT97 1194 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 HOMER1Q86YM7 354 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 RNF26Q9BY78 433 aaPredicted RBP17.13■□□□□ 0.33
LIMS4-203ENST00000632758 TANGO6Q9C0B7 1094 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 FEM1BQ9UK73 627 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 PRR12Q9ULL5 1215 aa17.13■□□□□ 0.33
LIMS4-203ENST00000632758 STAT2P52630 851 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 FOSBP53539 338 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 GPAT2Q6NUI2 795 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 CATSPERGQ6ZRH7 1159 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 TRIM22Q8IYM9 498 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 FAM184AQ8NB25 1140 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 CHURC1Q8WUH1 139 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 KIFC2Q96AC6 838 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 GJB4Q9NTQ9 266 aa17.12■□□□□ 0.33
LIMS4-203ENST00000632758 STK36Q9NRP7 1315 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 PLA2G6O60733 806 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 ZBTB48P10074 688 aaPredicted RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 APLP1P51693 650 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 GTF2A2P52657 109 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 AKAP17AQ02040 695 aaKnown RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 FAM160B2Q86V87 743 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 PROCA1Q8NCQ7 364 aaPredicted RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 MTMR8Q96EF0 704 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 CWC22Q9HCG8 908 aaKnown RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 FAM155AB1AL88 458 aaPredicted RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L15C9J2P7 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L13C9JLJ4 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L11C9JVI0 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L18D6R9N7 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L22D6RA61 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L17D6RBQ6 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L19D6RCP7 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L20D6RJB6 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 FLOT1O75955 427 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 DEXIO95424 95 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 DDIT3P35638 169 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 USP17L24Q0WX57 530 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 FASTKD5Q7L8L6 764 aaKnown RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 BRI3BPQ8WY22 251 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 RRP36Q96EU6 259 aaKnown RBP17.11■□□□□ 0.33
LIMS4-203ENST00000632758 SLF1Q9BQI6 1058 aa17.11■□□□□ 0.33
LIMS4-203ENST00000632758 CCL15-CCL14A0A0B4J2E2 113 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 SLC10A3P09131 477 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 CETPP11597 493 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 CCL15Q16663 113 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 PFKFB3Q16875 520 aaPredicted RBP17.1■□□□□ 0.33
LIMS4-203ENST00000632758 LARP1BQ659C4 914 aaKnown RBP17.1■□□□□ 0.33
LIMS4-203ENST00000632758 OTUD7BQ6GQQ9 843 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 PRPF38AQ8NAV1 312 aaKnown RBP17.1■□□□□ 0.33
LIMS4-203ENST00000632758 SHISA4Q96DD7 197 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 ALG1Q9BT22 464 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 PPP1R9AQ9ULJ8 1098 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 AGTPBP1Q9UPW5 1226 aa17.1■□□□□ 0.33
LIMS4-203ENST00000632758 BAZ2BQ9UIF8 2168 aaKnown RBP17.09■□□□□ 0.33
LIMS4-203ENST00000632758 PPP1R11O60927 126 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-203ENST00000632758 SCG2P13521 617 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 SYT1P21579 422 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 HOXA7P31268 230 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-203ENST00000632758 COG2Q14746 738 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 CDC37Q16543 378 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-203ENST00000632758 QRICH1Q2TAL8 776 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 CYP4F22Q6NT55 531 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 GPKOWQ92917 476 aaPredicted RBP eCLIP17.09■□□□□ 0.33
LIMS4-203ENST00000632758 ATG4CQ96DT6 458 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 HHIPL1Q96JK4 782 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 ZIC5Q96T25 663 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 PTPN18Q99952 460 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 CREBZFQ9NS37 354 aa17.09■□□□□ 0.33
LIMS4-203ENST00000632758 PNMA6FA0A0J9YX94 578 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 BTBD19C9JJ37 291 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 ZBTB5O15062 677 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 TAL1P17542 331 aaPredicted RBP17.08■□□□□ 0.32
LIMS4-203ENST00000632758 DSG3P32926 999 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 GUCY1B3Q02153 619 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 GRM1Q13255 1194 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 PKP1Q13835 747 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 PAXIP1Q6ZW49 1069 aaPredicted RBP17.08■□□□□ 0.32
LIMS4-203ENST00000632758 CCDC102AQ96A19 550 aa17.08■□□□□ 0.32
LIMS4-203ENST00000632758 P2RX7Q99572 595 aaKnown RBP17.08■□□□□ 0.32
LIMS4-203ENST00000632758 HTRA3P83110 453 aa17.07■□□□□ 0.32
LIMS4-203ENST00000632758 WWC2Q6AWC2 1192 aa17.07■□□□□ 0.32
LIMS4-203ENST00000632758 CCDC174Q6PII3 467 aa17.07■□□□□ 0.32
LIMS4-203ENST00000632758 POTEEQ6S8J3 1075 aa17.07■□□□□ 0.32
LIMS4-203ENST00000632758 COA7Q96BR5 231 aa17.07■□□□□ 0.32
LIMS4-203ENST00000632758 ASCC2Q9H1I8 757 aaPredicted RBP17.07■□□□□ 0.32
LIMS4-203ENST00000632758 RANBP17Q9H2T7 1088 aaKnown RBP17.07■□□□□ 0.32
LIMS4-203ENST00000632758 VPS54Q9P1Q0 977 aa17.07■□□□□ 0.32
LIMS4-203ENST00000632758 SEC63Q9UGP8 760 aaKnown RBP17.07■□□□□ 0.32
LIMS4-203ENST00000632758 TESPA1A2RU30 521 aaPredicted RBP17.06■□□□□ 0.32
LIMS4-203ENST00000632758 SPDYE16A6NNV3 312 aaPredicted RBP17.06■□□□□ 0.32
LIMS4-203ENST00000632758 DEFB115Q30KQ5 88 aa17.06■□□□□ 0.32
LIMS4-203ENST00000632758 TYW1BQ6NUM6 668 aa17.06■□□□□ 0.32
LIMS4-203ENST00000632758 HEATR3Q7Z4Q2 680 aa17.06■□□□□ 0.32
LIMS4-203ENST00000632758 FAM43AQ8N2R8 423 aa17.06■□□□□ 0.32
LIMS4-203ENST00000632758 WASF1Q92558 559 aa17.06■□□□□ 0.32
LIMS4-203ENST00000632758 C8orf76Q96K31 380 aa17.06■□□□□ 0.32
LIMS4-203ENST00000632758 HOXC10Q9NYD6 342 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms