RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CC2D1AQ6P1N0 951 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-203ENST00000631321 TPTE2Q6XPS3 522 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 STAG2Q8N3U4 1231 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 IRX2Q9BZI1 471 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-203ENST00000631321 ABHD10Q9NUJ1 306 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 SRP68Q9UHB9 627 aaKnown RBP14.41□□□□□ -0.1
LINC00540-203ENST00000631321 STAT6P42226 847 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 PRCPP42785 496 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 ERVK-24P63145 666 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 JAKMIP3Q5VZ66 844 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 ZNF771Q7L3S4 317 aaPredicted RBP14.4□□□□□ -0.1
LINC00540-203ENST00000631321 CCDC148Q8NFR7 591 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 WDR66Q8TBY9 1149 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 GPKOWQ92917 476 aaPredicted RBP eCLIP14.4□□□□□ -0.1
LINC00540-203ENST00000631321 CCSER1Q9C0I3 900 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 LZTFL1Q9NQ48 299 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 CDC23Q9UJX2 597 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 PCDHA6Q9UN73 950 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 PCDHA8Q9Y5H6 950 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 A0A0U1RQJ8 604 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 LAD1O00515 517 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 TBC1D8O95759 1140 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 PRPHP41219 470 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 TEX35Q5T0J7 233 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 CYP26C1Q6V0L0 522 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 DTHD1Q6ZMT9 781 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 SRGAP1Q7Z6B7 1085 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 IRF2BP1Q8IU81 584 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 ATRIPQ8WXE1 791 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 DNAJC5Q9H3Z4 198 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 ST7Q9NRC1 585 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 TAB2Q9NYJ8 693 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 GDAQ9Y2T3 454 aa14.4□□□□□ -0.1
LINC00540-203ENST00000631321 CCDC194A0A1B0GVG4 234 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 COBLO75128 1261 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 KCNQ4P56696 695 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 SMIM5Q71RC9 77 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 LZTS2Q9BRK4 669 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 PARD6BQ9BYG5 372 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 VPS16Q9H269 839 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 BARHL2Q9NY43 387 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 MYO1AQ9UBC5 1043 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 PALM3A6NDB9 673 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-203ENST00000631321 RNF225M0QZC1 329 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-203ENST00000631321 STXBP3O00186 592 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 KLRC4O43908 158 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 LDHBP07195 334 aaKnown RBP14.39□□□□□ -0.11
LINC00540-203ENST00000631321 USP5P45974 858 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 TUBB4BP68371 445 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 GSTO1P78417 241 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 CEP112Q8N8E3 955 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 RASGRP4Q8TDF6 673 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 SH3RF3Q8TEJ3 882 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-203ENST00000631321 DYNLL2Q96FJ2 89 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 EPC1Q9H2F5 836 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 TMEM60Q9H2L4 133 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 KBTBD4Q9NVX7 518 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 LEMD3Q9Y2U8 911 aa14.39□□□□□ -0.11
LINC00540-203ENST00000631321 A0A1W2PQC6 194 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 CYTH3O43739 400 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 ZPR1O75312 459 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 RHOBTB3O94955 611 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 SEC31AO94979 1220 aaKnown RBP14.38□□□□□ -0.11
LINC00540-203ENST00000631321 CDC25AP30304 524 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 ARHGAP25P42331 645 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 CHMP4BP1P59074 171 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 THAP9Q9H5L6 903 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 MAGEF1Q9HAY2 307 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 BAZ2BQ9UIF8 2168 aaKnown RBP14.38□□□□□ -0.11
LINC00540-203ENST00000631321 CCDC88AQ3V6T2 1871 aa14.38□□□□□ -0.11
LINC00540-203ENST00000631321 LGALS16A8MUM7 142 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 PARP1P09874 1014 aaKnown RBP14.37□□□□□ -0.11
LINC00540-203ENST00000631321 EEF1GP26641 437 aaKnown RBP14.37□□□□□ -0.11
LINC00540-203ENST00000631321 ZNF569Q5MCW4 686 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 C15orf52Q6ZUT6 534 aaKnown RBP14.37□□□□□ -0.11
LINC00540-203ENST00000631321 ACRBPQ8NEB7 543 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 CUEDC2Q9H467 287 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 MKNK2Q9HBH9 465 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 CTAGE9A4FU28 777 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 USP17L3A6NCW0 530 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 USP17L4A6NCW7 530 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 SASH3O75995 380 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 BAG3O95817 575 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 BRD3Q15059 726 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 USP17L1Q7RTZ2 530 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 GIMAP8Q8ND71 665 aaPredicted RBP14.37□□□□□ -0.11
LINC00540-203ENST00000631321 ZNF507Q8TCN5 953 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 NUP88Q99567 741 aaPredicted RBP14.37□□□□□ -0.11
LINC00540-203ENST00000631321 SPZ1Q9BXG8 430 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 ARFGAP3Q9NP61 516 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 JAG2Q9Y219 1238 aa14.37□□□□□ -0.11
LINC00540-203ENST00000631321 CCDC151A5D8V7 595 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 TSPY3P0CV98 308 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 TSPY8P0CW00 308 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 KRT9P35527 623 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 UBXN1Q04323 297 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 AMOTL1Q8IY63 956 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 MB21D1Q8N884 522 aa14.36□□□□□ -0.11
LINC00540-203ENST00000631321 NOC3LQ8WTT2 800 aaKnown RBP14.36□□□□□ -0.11
LINC00540-203ENST00000631321 AK8Q96MA6 479 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms