RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 REC8O95072 547 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 COPB2P35606 906 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 STAT3P40763 770 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 IFIT1BQ5T764 474 aaKnown RBP24.29■■□□□ 1.48
CLN3-240ENST00000631023 PXYLP1Q8TE99 480 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 TAF6LQ9Y6J9 622 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 STRNO43815 780 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 PDHBP11177 359 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 ERCC3P19447 782 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 STOX1Q6ZVD7 989 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 NCAPG2Q86XI2 1143 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 RIOX2Q8IUF8 465 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 PNMA1Q8ND90 353 aa24.29■■□□□ 1.48
CLN3-240ENST00000631023 BIN2Q9UBW5 565 aaPredicted RBP24.29■■□□□ 1.48
CLN3-240ENST00000631023 PTPREP23469 700 aa24.28■■□□□ 1.48
CLN3-240ENST00000631023 REPS2Q8NFH8 660 aa24.28■■□□□ 1.48
CLN3-240ENST00000631023 SH3TC2Q8TF17 1288 aa24.28■■□□□ 1.48
CLN3-240ENST00000631023 TEX13BQ9BXU2 312 aa24.28■■□□□ 1.48
CLN3-240ENST00000631023 SLC38A10Q9HBR0 1119 aa24.28■■□□□ 1.48
CLN3-240ENST00000631023 ZNF214Q9UL59 606 aaPredicted RBP24.28■■□□□ 1.48
CLN3-240ENST00000631023 SLC15A5A6NIM6 579 aa24.27■■□□□ 1.48
CLN3-240ENST00000631023 IFIT3O14879 490 aaKnown RBP24.27■■□□□ 1.48
CLN3-240ENST00000631023 RGS2P41220 211 aa24.27■■□□□ 1.48
CLN3-240ENST00000631023 MORN1Q5T089 497 aa24.27■■□□□ 1.48
CLN3-240ENST00000631023 MYH6P13533 1939 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 ATP2A1O14983 1001 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 SNHG28P0DPA3 235 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 XRCC5P13010 732 aaKnown RBP24.26■■□□□ 1.47
CLN3-240ENST00000631023 ZKSCAN1P17029 563 aaPredicted RBP24.26■■□□□ 1.47
CLN3-240ENST00000631023 OAZ1P54368 228 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 SEC23AQ15436 765 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 GPATCH4Q5T3I0 446 aaKnown RBP24.26■■□□□ 1.47
CLN3-240ENST00000631023 CPXCR1Q8N123 301 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 ZNF333Q96JL9 665 aa24.26■■□□□ 1.47
CLN3-240ENST00000631023 CYP2B6P20813 491 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 UBXN2AP68543 259 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 ZNF543Q08ER8 600 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 MAP2K5Q13163 448 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 BTNL9Q6UXG8 535 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 RASGRP2Q7LDG7 609 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 MB21D2Q8IYB1 491 aaPredicted RBP24.25■■□□□ 1.47
CLN3-240ENST00000631023 TRMT44Q8IYL2 757 aaKnown RBP24.25■■□□□ 1.47
CLN3-240ENST00000631023 GPCPD1Q9NPB8 672 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 PRR12Q9ULL5 1215 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 FRMPD2Q68DX3 1309 aaPredicted RBP24.25■■□□□ 1.47
CLN3-240ENST00000631023 ELNP15502 786 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 MCM5P33992 734 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 GRB14Q14449 540 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 SNRNP48Q6IEG0 339 aaKnown RBP24.25■■□□□ 1.47
CLN3-240ENST00000631023 USP6NLQ92738 828 aa24.25■■□□□ 1.47
CLN3-240ENST00000631023 SMCHD1A6NHR9 2005 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 FCER1AP12319 257 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 WTAPQ15007 396 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 TTBK2Q6IQ55 1244 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 CHST3Q7LGC8 479 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 ABRAQ8N0Z2 381 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 MTA3Q9BTC8 594 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 TMEM106CQ9BVX2 250 aa24.24■■□□□ 1.47
CLN3-240ENST00000631023 RAVER2Q9HCJ3 691 aaKnown RBP24.24■■□□□ 1.47
CLN3-240ENST00000631023 SLC4A3P48751 1232 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 KRT32Q14532 448 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 TSGA10IPQ3SY00 556 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 TMEM67Q5HYA8 995 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 SYDE2Q5VT97 1194 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 APBA2Q99767 749 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 SLC5A4Q9NY91 659 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 ZNF236Q9UL36 1845 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 PLXNA1Q9UIW2 1896 aa24.23■■□□□ 1.47
CLN3-240ENST00000631023 SLC16A2P36021 539 aa24.22■■□□□ 1.47
CLN3-240ENST00000631023 ASPRV1Q53RT3 343 aa24.22■■□□□ 1.47
CLN3-240ENST00000631023 DPP9Q86TI2 863 aa24.22■■□□□ 1.47
CLN3-240ENST00000631023 RBBP6Q7Z6E9 1792 aaKnown RBP24.21■■□□□ 1.47
CLN3-240ENST00000631023 EPB41L2O43491 1005 aaKnown RBP24.21■■□□□ 1.47
CLN3-240ENST00000631023 PRC1O43663 620 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 HMGCRP04035 888 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 PARP1P09874 1014 aaKnown RBP24.21■■□□□ 1.47
CLN3-240ENST00000631023 ADORA2AP29274 412 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 ANTXR2P58335 489 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 IGDCC4Q8TDY8 1250 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 TMEM87BQ96K49 555 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 NEK1Q96PY6 1258 aa24.21■■□□□ 1.47
CLN3-240ENST00000631023 HOXC6P09630 235 aa24.2■■□□□ 1.47
CLN3-240ENST00000631023 KCTD2Q14681 263 aa24.2■■□□□ 1.47
CLN3-240ENST00000631023 TMTC2Q8N394 836 aa24.2■■□□□ 1.47
CLN3-240ENST00000631023 MMP19Q99542 508 aa24.2■■□□□ 1.47
CLN3-240ENST00000631023 FBXO40Q9UH90 709 aa24.2■■□□□ 1.47
CLN3-240ENST00000631023 MYCP01106 439 aaPredicted RBP24.2■■□□□ 1.46
CLN3-240ENST00000631023 INHAP05111 366 aa24.2■■□□□ 1.46
CLN3-240ENST00000631023 GOLGA8HP0CJ92 632 aa24.2■■□□□ 1.46
CLN3-240ENST00000631023 CCDC174Q6PII3 467 aa24.2■■□□□ 1.46
CLN3-240ENST00000631023 RANBP17Q9H2T7 1088 aaKnown RBP24.2■■□□□ 1.46
CLN3-240ENST00000631023 PNMA2Q9UL42 364 aa24.2■■□□□ 1.46
CLN3-240ENST00000631023 RIPK3Q9Y572 518 aa24.2■■□□□ 1.46
CLN3-240ENST00000631023 BAZ2BQ9UIF8 2168 aaKnown RBP24.19■■□□□ 1.46
CLN3-240ENST00000631023 HSPA4P34932 840 aa24.19■■□□□ 1.46
CLN3-240ENST00000631023 SOX10P56693 466 aa24.19■■□□□ 1.46
CLN3-240ENST00000631023 TKFCQ3LXA3 575 aa24.19■■□□□ 1.46
CLN3-240ENST00000631023 CATIPQ7Z7H3 387 aa24.19■■□□□ 1.46
CLN3-240ENST00000631023 RASEFQ8IZ41 740 aa24.19■■□□□ 1.46
CLN3-240ENST00000631023 CHST13Q8NET6 341 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms