RNA–Protein interactions for RNA: ENST00000629912.1

NEK3-211, Transcript of NIMA related kinase 3, humanhuman

TSL 5 BASIC

Gene NEK3, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-211ENST00000629912 SYNPO2Q9UMS6 1093 aa6.34□□□□□ -1.39
NEK3-211ENST00000629912 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.34□□□□□ -1.39
NEK3-211ENST00000629912 KIF13BQ9NQT8 1826 aa6.34□□□□□ -1.4
NEK3-211ENST00000629912 COL2A1P02458 1487 aaPredicted RBP6.34□□□□□ -1.4
NEK3-211ENST00000629912 ATRNL1Q5VV63 1379 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 PNMA6FA0A0J9YX94 578 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 CCDC194A0A1B0GVG4 234 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 DDTLA6NHG4 134 aaPredicted RBP6.33□□□□□ -1.4
NEK3-211ENST00000629912 YDJCA8MPS7 323 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 WNT7AO00755 349 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 C21orf2O43822 256 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 NEMFO60524 1076 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 GOLGA8HP0CJ92 632 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 TERF1P54274 439 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 TGFB2P61812 414 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 IL17AQ16552 155 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 CERKLQ49MI3 558 aaPredicted RBP6.33□□□□□ -1.4
NEK3-211ENST00000629912 SPECC1Q5M775 1068 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 SOGA3Q5TF21 947 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 FKBP1CQ5VVH2 108 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 PPP1R18Q6NYC8 613 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 RSBN1LQ6PCB5 846 aaPredicted RBP6.33□□□□□ -1.4
NEK3-211ENST00000629912 DTHD1Q6ZMT9 781 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 USP49Q70CQ1 688 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 SH3BP5LQ7L8J4 393 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 HEATR3Q7Z4Q2 680 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 SIAH1Q8IUQ4 282 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 AOPEPQ8N6M6 819 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 IQUBQ8NA54 791 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 MTMR14Q8NCE2 650 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 ENOX1Q8TC92 643 aaKnown RBP6.33□□□□□ -1.4
NEK3-211ENST00000629912 KIAA1524Q8TCG1 905 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 DCAF4Q8WV16 495 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 PIBF1Q8WXW3 757 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 GPKOWQ92917 476 aaPredicted RBP eCLIP6.33□□□□□ -1.4
NEK3-211ENST00000629912 SMARCE1Q969G3 411 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 PAGE5Q96GU1 130 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 EPSTI1Q96J88 318 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 PRMT6Q96LA8 375 aaPredicted RBP6.33□□□□□ -1.4
NEK3-211ENST00000629912 GSDMAQ96QA5 445 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 PIGSQ96S52 555 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 CCSER1Q9C0I3 900 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 IMPACTQ9P2X3 320 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 SEC63Q9UGP8 760 aaKnown RBP6.33□□□□□ -1.4
NEK3-211ENST00000629912 DACH1Q9UI36 760 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 MAN1B1Q9UKM7 699 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 SIPA1L1O43166 1804 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 ADAMTSL1Q8N6G6 1762 aa6.33□□□□□ -1.4
NEK3-211ENST00000629912 A0A087WWV3 80 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 A0A087X0B3 334 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 VWA3AA6NCI4 1184 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 BIN1O00499 593 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 FOXN1O15353 648 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 PPIP5K2O43314 1243 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 DPEP1P16444 411 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 BMP6P22004 513 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 ERCC5P28715 1186 aaPredicted RBP6.32□□□□□ -1.4
NEK3-211ENST00000629912 MCM7P33993 719 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 RBM5P52756 815 aaKnown RBP eCLIP6.32□□□□□ -1.4
NEK3-211ENST00000629912 NAPAP54920 295 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 MYL5Q02045 173 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 DPYDQ12882 1025 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 NOLC1Q14978 699 aaKnown RBP eCLIP6.32□□□□□ -1.4
NEK3-211ENST00000629912 NONOQ15233 471 aaKnown RBP eCLIP6.32□□□□□ -1.4
NEK3-211ENST00000629912 E2F4Q16254 413 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 CFAP100Q494V2 611 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 PDXDC2PQ6P474 469 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 TMEM179Q6ZVK1 233 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 CCDC186Q7Z3E2 898 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 TEX2Q8IWB9 1127 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 DRC7Q8IY82 874 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 AGBL3Q8NEM8 1001 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 FBXO41Q8TF61 875 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 SYMPKQ92797 1274 aaKnown RBP6.32□□□□□ -1.4
NEK3-211ENST00000629912 AK8Q96MA6 479 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 ZNF830Q96NB3 372 aaPredicted RBP6.32□□□□□ -1.4
NEK3-211ENST00000629912 UBA5Q9GZZ9 404 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 GLT8D2Q9H1C3 349 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 HSD3B7Q9H2F3 369 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 RNF39Q9H2S5 420 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 TDRD3Q9H7E2 651 aaKnown RBP6.32□□□□□ -1.4
NEK3-211ENST00000629912 DNAJC18Q9H819 358 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 TTC12Q9H892 705 aaPredicted RBP6.32□□□□□ -1.4
NEK3-211ENST00000629912 JMJD4Q9H9V9 463 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 VAT1LQ9HCJ6 419 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 RIC8AQ9NPQ8 531 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 SPTLC3Q9NUV7 552 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 ZNF219Q9P2Y4 722 aaPredicted RBP6.32□□□□□ -1.4
NEK3-211ENST00000629912 HDAC9Q9UKV0 1011 aa6.32□□□□□ -1.4
NEK3-211ENST00000629912 SPDYE2BA6NHP3 402 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 MPHOSPH10O00566 681 aaKnown RBP6.31□□□□□ -1.4
NEK3-211ENST00000629912 CBFA2T2O43439 604 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 GTPBP6O43824 516 aaPredicted RBP6.31□□□□□ -1.4
NEK3-211ENST00000629912 TBC1D12O60347 775 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 MYL1P05976 194 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 PRR29P0C7W0 189 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 SPDYE6P0CI01 402 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 EEF2P13639 858 aaKnown RBP6.31□□□□□ -1.4
NEK3-211ENST00000629912 PTGS1P23219 599 aa6.31□□□□□ -1.4
NEK3-211ENST00000629912 TXLNAP40222 546 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms