RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ANKRD35Q8N283 1001 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 PPP4R1Q8TF05 950 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 SEMA3EO15041 775 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 HOXA7P31268 230 aaPredicted RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 SPDYE3A6NKU9 549 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 CCNT1O60563 726 aaKnown RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 PPM1FP49593 454 aaPredicted RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 PPARDQ03181 441 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 SCRN1Q12765 414 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 WDR44Q5JSH3 913 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 VIPAS39Q9H9C1 493 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 SOWAHDA6NJG2 315 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 EYA2O00167 538 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 RPN1P04843 607 aaKnown RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 STAT1P42224 750 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 NME8Q8N427 588 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 MRRFQ96E11 262 aaKnown RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 ANKRD20A4Q4UJ75 823 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 ANKRD20A8PQ5CZ79 823 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 ANKRD20A2Q5SQ80 823 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 ANKRD20A1Q5TYW2 823 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 CAPRIN2Q6IMN6 1127 aaKnown RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 DBNDD2Q9BQY9 259 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 LZTS2Q9BRK4 669 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 MBD4O95243 580 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 C10orf76Q5T2E6 689 aa9.78□□□□□ -0.84
VCL-206ENST00000623461 ZBTB12Q9Y330 459 aaPredicted RBP9.78□□□□□ -0.84
VCL-206ENST00000623461 PARP1P09874 1014 aaKnown RBP9.77□□□□□ -0.84
VCL-206ENST00000623461 STRN3Q13033 797 aa9.77□□□□□ -0.84
VCL-206ENST00000623461 C6orf118Q5T5N4 469 aa9.77□□□□□ -0.84
VCL-206ENST00000623461 TRIM42Q8IWZ5 723 aa9.77□□□□□ -0.84
VCL-206ENST00000623461 NLRC4Q9NPP4 1024 aa9.77□□□□□ -0.84
VCL-206ENST00000623461 URB2Q14146 1524 aaKnown RBP9.77□□□□□ -0.84
VCL-206ENST00000623461 RESTQ13127 1097 aa9.77□□□□□ -0.84
VCL-206ENST00000623461 EPSTI1Q96J88 318 aa9.77□□□□□ -0.84
VCL-206ENST00000623461 NDUFA10O95299 355 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 KRT5P13647 590 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 ESRRGP62508 458 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 RIC8AQ9NPQ8 531 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 TACC3Q9Y6A5 838 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 EIF4G3O43432 1585 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 ZMYND10O75800 440 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 MRPL12P52815 198 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 NONOQ15233 471 aaKnown RBP eCLIP9.77□□□□□ -0.854e-7■■■■□ 19.6
VCL-206ENST00000623461 TEX11Q8IYF3 940 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 LINC00301Q8NCQ3 95 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 U2AF1L4Q8WU68 220 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 SPDL1Q96EA4 605 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 MAN1B1Q9UKM7 699 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 MRFAP1Q9Y605 127 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 H2AFZP0C0S5 128 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 HSPA6P17066 643 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 PDIA3P30101 505 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 H2AFVQ71UI9 128 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 ABTB1Q969K4 478 aaPredicted RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 LRWD1Q9UFC0 647 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 KCNJ14Q9UNX9 436 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 TARSL2A2RTX5 802 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 RASSF10A6NK89 507 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 ELF1P32519 619 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 GGCXP38435 758 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.77□□□□□ -0.85
VCL-206ENST00000623461 METTL22Q9BUU2 404 aaPredicted RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 PGRMC1O00264 195 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 ADCY2Q08462 1091 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 NLRP7Q8WX94 980 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 CUEDC2Q9H467 287 aa9.77□□□□□ -0.85
VCL-206ENST00000623461 NOVA2Q9UNW9 492 aaKnown RBP9.77□□□□□ -0.85
VCL-206ENST00000623461 ANO9A1A5B4 782 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 GMNCA6NCL1 334 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 LONP1P36776 959 aaKnown RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 DHTKD1Q96HY7 919 aaPredicted RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 YIPF3Q9GZM5 350 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 DAAM1Q9Y4D1 1078 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 CARMIL3Q8ND23 1372 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 MAPK13O15264 365 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 SART1O43290 800 aaKnown RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 SLFN14P0C7P3 912 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 NCAPH2Q6IBW4 605 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 GABPB2Q8TAK5 448 aaPredicted RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 SERPINB6P35237 376 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 ADCY8P40145 1251 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 TMED1Q13445 227 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 DIXDC1Q155Q3 683 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 PALM2Q8IXS6 379 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 DRC3Q9H069 523 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 RWDD2AQ9UIY3 292 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 TADA3O75528 432 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 ATF2P15336 505 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 PLCG2P16885 1265 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 GOLGA8FQ08AF8 430 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 GOLGA8DPQ0D2H9 430 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 TBC1D1Q86TI0 1168 aaPredicted RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 FGFR1OP2Q9NVK5 253 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 DCTN3O75935 186 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 IFNAR2P48551 515 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 EHHADHQ08426 723 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 PDCLQ13371 301 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 MYOCDQ8IZQ8 938 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 ACRBPQ8NEB7 543 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms