RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TMEM253P0C7T8 217 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 MED14OSP0DP75 135 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 CFPP27918 469 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 GALK1P51570 392 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 PMS1P54277 932 aaKnown RBP8.49□□□□□ -1.05
VPS29-212ENST00000621131 ANKRD39Q53RE8 183 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 UNC5AQ6ZN44 842 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 RUFY4Q6ZNE9 571 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 HHIPL1Q96JK4 782 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 SLC26A8Q96RN1 970 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 ZNF552Q9H707 407 aaPredicted RBP8.49□□□□□ -1.05
VPS29-212ENST00000621131 GINM1Q9NU53 330 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 ETV2O00321 342 aaPredicted RBP8.48□□□□□ -1.05
VPS29-212ENST00000621131 MEIS1O00470 390 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 NFIBO00712 420 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 BMP8BP34820 402 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 COL9A2Q14055 689 aaPredicted RBP8.48□□□□□ -1.05
VPS29-212ENST00000621131 ZYXQ15942 572 aaKnown RBP8.48□□□□□ -1.05
VPS29-212ENST00000621131 FBXW10Q5XX13 1052 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 PPFIBP1Q86W92 1011 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 ANKLE2Q86XL3 938 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 C1QL4Q86Z23 238 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 KCNN1Q92952 543 aa8.48□□□□□ -1.05
VPS29-212ENST00000621131 MRRFQ96E11 262 aaKnown RBP8.48□□□□□ -1.05
VPS29-212ENST00000621131 ZNF205O95201 554 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 VAV1P15498 845 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 GLDCP23378 1020 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 GUCY2CP25092 1073 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 CEBPAP49715 358 aaPredicted RBP8.47□□□□□ -1.05
VPS29-212ENST00000621131 HDLBPQ00341 1268 aaKnown RBP8.47□□□□□ -1.05
VPS29-212ENST00000621131 LSRQ86X29 649 aaPredicted RBP8.47□□□□□ -1.05
VPS29-212ENST00000621131 CCDC144CPQ8IYA2 1237 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 RASGRP4Q8TDF6 673 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 MCOLN1Q9GZU1 580 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 KIAA1522Q9P206 1035 aaPredicted RBP8.47□□□□□ -1.05
VPS29-212ENST00000621131 TNFRSF10DQ9UBN6 386 aa8.47□□□□□ -1.05
VPS29-212ENST00000621131 MYOCOSA0A1B0GUC4 107 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 FADS2P1A8MWK0 482 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 SOX9P48436 509 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 SLC14A2Q15849 920 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 AXDND1Q5T1B0 1012 aaPredicted RBP8.46□□□□□ -1.06
VPS29-212ENST00000621131 SPOCD1Q6ZMY3 1216 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 ATG14Q6ZNE5 492 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 CEP128Q6ZU80 1094 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 SIRT2Q8IXJ6 389 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 SMARCC1Q92922 1105 aaPredicted RBP8.46□□□□□ -1.06
VPS29-212ENST00000621131 FCRL2Q96LA5 508 aaPredicted RBP8.46□□□□□ -1.06
VPS29-212ENST00000621131 TOX2Q96NM4 488 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 CD320Q9NPF0 282 aa8.46□□□□□ -1.06
VPS29-212ENST00000621131 UNCXA6NJT0 531 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 PEX10O60683 326 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 KRTAP19-4Q3LI73 84 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 C9orf131Q5VYM1 1079 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 TDRD10Q5VZ19 366 aaKnown RBP8.45□□□□□ -1.06
VPS29-212ENST00000621131 DCAF15Q66K64 600 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 ZNF605Q86T29 641 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 NT5DC4Q86YG4 428 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 TMEM52Q8NDY8 209 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 SPATA32Q96LK8 384 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 PLCD4Q9BRC7 762 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 CRTAC1Q9NQ79 661 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 EFR3BQ9Y2G0 817 aa8.45□□□□□ -1.06
VPS29-212ENST00000621131 GSNP06396 782 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 PDE6BP35913 854 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 RTP1P59025 263 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 CRTC3Q6UUV7 619 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 CCDC81Q6ZN84 652 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 RGS22Q8NE09 1264 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 GP6Q9HCN6 339 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 ERVK13-1Q9NX77 482 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 ZNF214Q9UL59 606 aaPredicted RBP8.44□□□□□ -1.06
VPS29-212ENST00000621131 SMG5Q9UPR3 1016 aaKnown RBP8.44□□□□□ -1.06
VPS29-212ENST00000621131 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.44□□□□□ -1.06
VPS29-212ENST00000621131 LTBP3Q9NS15 1303 aa8.44□□□□□ -1.06
VPS29-212ENST00000621131 TP53P04637 393 aaPredicted RBP8.43□□□□□ -1.06
VPS29-212ENST00000621131 PNLIPP16233 465 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 ENDOUP21128 410 aaKnown RBP8.43□□□□□ -1.06
VPS29-212ENST00000621131 ZNF445P59923 1031 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 FBLN7Q53RD9 439 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 RTP2Q5QGT7 225 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 GPRASP2Q96D09 838 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 AP5S1Q9NUS5 200 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 ZNF451Q9Y4E5 1061 aa8.43□□□□□ -1.06
VPS29-212ENST00000621131 NPIPB6E9PJ23 425 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 CD247P20963 164 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 GJA8P48165 433 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 GIPRP48546 466 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 KIR3DS1Q14943 382 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 KCNA10Q16322 511 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 HSF5Q4G112 596 aaPredicted RBP8.42□□□□□ -1.06
VPS29-212ENST00000621131 LRRC56Q8IYG6 542 aaPredicted RBP8.42□□□□□ -1.06
VPS29-212ENST00000621131 CRBNQ96SW2 442 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 DSCC1Q9BVC3 393 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 CDADC1Q9BWV3 514 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 SLC12A9Q9BXP2 914 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 GCM1Q9NP62 436 aa8.42□□□□□ -1.06
VPS29-212ENST00000621131 TEX51A0A1B0GUA7 166 aa8.41□□□□□ -1.06
VPS29-212ENST00000621131 OR14I1A6ND48 311 aa8.41□□□□□ -1.06
VPS29-212ENST00000621131 TCAF2A6NFQ2 919 aa8.41□□□□□ -1.06
VPS29-212ENST00000621131 WTIPA6NIX2 430 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms