RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TSHZ3Q63HK5 1081 aa14.17□□□□□ -0.14
UPF3B-204ENST00000619445 SNRNP48Q6IEG0 339 aaKnown RBP14.17□□□□□ -0.14
UPF3B-204ENST00000619445 ZNF467Q7Z7K2 595 aaPredicted RBP14.17□□□□□ -0.14
UPF3B-204ENST00000619445 NEDD1Q8NHV4 660 aa14.17□□□□□ -0.14
UPF3B-204ENST00000619445 CEP95Q96GE4 821 aa14.17□□□□□ -0.14
UPF3B-204ENST00000619445 PCDHB15Q9Y5E8 787 aa14.17□□□□□ -0.14
UPF3B-204ENST00000619445 LAMA3Q16787 3333 aa14.17□□□□□ -0.14
UPF3B-204ENST00000619445 DNAH12Q6ZR08 3092 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 ATN1P54259 1190 aaPredicted RBP14.16□□□□□ -0.14
UPF3B-204ENST00000619445 RRP1P56182 461 aaKnown RBP14.16□□□□□ -0.14
UPF3B-204ENST00000619445 RTP1P59025 263 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 SNX17Q15036 470 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 LRRC41Q15345 812 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 SLC39A5Q6ZMH5 540 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 CHST13Q8NET6 341 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 CHURC1Q8WUH1 139 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 SLC38A10Q9HBR0 1119 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 XPNPEP3Q9NQH7 507 aa14.16□□□□□ -0.14
UPF3B-204ENST00000619445 PGK2P07205 417 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 BMP3P12645 472 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 PPARAQ07869 468 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 MAMDC4Q6UXC1 1216 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 FAM160B2Q86V87 743 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 STK11IPQ8N1F8 1099 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 EVI5LQ96CN4 794 aa14.15□□□□□ -0.14
UPF3B-204ENST00000619445 SOX1O00570 391 aaPredicted RBP14.14□□□□□ -0.15
UPF3B-204ENST00000619445 PRDM1O75626 825 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 STAT2P52630 851 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 HDAC1Q13547 482 aaPredicted RBP14.14□□□□□ -0.15
UPF3B-204ENST00000619445 FAM47AQ5JRC9 791 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 SLFN13Q68D06 897 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 KIFC2Q96AC6 838 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 LRCH3Q96II8 777 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 GMCL1Q96IK5 515 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 NUP88Q99567 741 aaPredicted RBP14.14□□□□□ -0.15
UPF3B-204ENST00000619445 TSEN34Q9BSV6 310 aaKnown RBP14.14□□□□□ -0.15
UPF3B-204ENST00000619445 FAM184BQ9ULE4 1060 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 PHF24Q9UPV7 400 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 ATP11BQ9Y2G3 1177 aa14.14□□□□□ -0.15
UPF3B-204ENST00000619445 DNAJC25-GNG10A0A024R161 153 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 PLA2G6O60733 806 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 MYCNP04198 464 aaPredicted RBP14.13□□□□□ -0.15
UPF3B-204ENST00000619445 ADCYAP1R1P41586 468 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 MDM2Q00987 491 aaPredicted RBP14.13□□□□□ -0.15
UPF3B-204ENST00000619445 TFAP4Q01664 338 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 TKFCQ3LXA3 575 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 PRAMEF19Q5SWL8 479 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 ANKRD45Q5TZF3 282 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 CPXCR1Q8N123 301 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 ANKRD35Q8N283 1001 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 NUP133Q8WUM0 1156 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 SPC25Q9HBM1 224 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 HELLSQ9NRZ9 838 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 ANAPC4Q9UJX5 808 aa14.13□□□□□ -0.15
UPF3B-204ENST00000619445 SALL3Q9BXA9 1300 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 MOXD2PA6NHM9 499 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 TSPY2A6NKD2 308 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 ZNF865P0CJ78 1059 aaPredicted RBP14.12□□□□□ -0.15
UPF3B-204ENST00000619445 SLC1A4P43007 532 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 ALX1Q15699 326 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 ANO1Q5XXA6 986 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 LRRC47Q8N1G4 583 aaKnown RBP14.12□□□□□ -0.15
UPF3B-204ENST00000619445 DEFB123Q8N688 67 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 ABHD16BQ9H3Z7 469 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 TACC3Q9Y6A5 838 aa14.12□□□□□ -0.15
UPF3B-204ENST00000619445 DUSP11O75319 330 aaKnown RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 NT5C2P49902 561 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 MFAP1P55081 439 aaKnown RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 IKQ13123 557 aaPredicted RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 FAM109BQ6ICB4 259 aaPredicted RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 OTUD7AQ8TE49 926 aaPredicted RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 STAG1Q8WVM7 1258 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 SEC62Q99442 399 aaKnown RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 ACAD9Q9H845 621 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 PNMA2Q9UL42 364 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 ISY1Q9ULR0 285 aaKnown RBP14.11□□□□□ -0.15
UPF3B-204ENST00000619445 STX8Q9UNK0 236 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 LTBP2Q14767 1821 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 ZMYM6O95789 1325 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 MROH7Q68CQ1 1323 aa14.11□□□□□ -0.15
UPF3B-204ENST00000619445 TMEM232C9JQI7 657 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 ORC4O43929 436 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 PCP11498 1178 aaKnown RBP14.1□□□□□ -0.15
UPF3B-204ENST00000619445 PDE1AP54750 535 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 TRIM60Q495X7 471 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 RCSD1Q6JBY9 416 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 POTEDQ86YR6 584 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 PCSK9Q8NBP7 692 aaKnown RBP14.1□□□□□ -0.15
UPF3B-204ENST00000619445 TOX2Q96NM4 488 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 RAVER2Q9HCJ3 691 aaKnown RBP14.1□□□□□ -0.15
UPF3B-204ENST00000619445 PRDM5Q9NQX1 630 aaPredicted RBP14.1□□□□□ -0.15
UPF3B-204ENST00000619445 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.1□□□□□ -0.15
UPF3B-204ENST00000619445 RIPK3Q9Y572 518 aa14.1□□□□□ -0.15
UPF3B-204ENST00000619445 ASB14A6NK59 587 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 ADAMTS4O75173 837 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 PGK1P00558 417 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 CST5P28325 142 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 SLC4A3P48751 1232 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 ACVR2BQ13705 512 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 MCMDC2Q4G0Z9 681 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 334.7 ms