RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SRRM3A6NNA2 597 aaPredicted RBP12.11□□□□□ -0.47
UPF3A-212ENST00000619079 MYO1FO00160 1098 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 ZNF213O14771 459 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 KIF3CO14782 793 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 HSF2BPO75031 334 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 KRT9P35527 623 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 EPHB4P54760 987 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 TSR1Q2NL82 804 aaKnown RBP12.11□□□□□ -0.47
UPF3A-212ENST00000619079 BICDL1Q6ZP65 573 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 ANKRD13DQ6ZTN6 518 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 LRP10Q7Z4F1 713 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 TBC1D22AQ8WUA7 517 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 MIEF2Q96C03 454 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 GDAP1L1Q96MZ0 367 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 NEUROD6Q96NK8 337 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 AIFM3Q96NN9 605 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 VCPKMTQ9H867 229 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 SAMM50Q9Y512 469 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 ATP1A1P05023 1023 aaKnown RBP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 IFIT1P09914 478 aaKnown RBP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 GCFC2P16383 781 aaKnown RBP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 HAND2P61296 217 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 CCDC122Q5T0U0 273 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 WLSQ5T9L3 541 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 LRCH2Q5VUJ6 765 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 KLHL10Q6JEL2 608 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 SND1Q7KZF4 910 aaKnown RBP eCLIP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 MMGT1Q8N4V1 131 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 KLC4Q9NSK0 619 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 SRPRBQ9Y5M8 271 aaKnown RBP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 UBR3Q6ZT12 1888 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 GOLGA6L7A0A1B0GV03 622 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 CCDC189A1A4V9 331 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 ENC1O14682 589 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 CAMTA2O94983 1202 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 IPO7O95373 1038 aaKnown RBP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 MYBL2P10244 700 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 MRPL12P52815 198 aaKnown RBP12.1□□□□□ -0.47
UPF3A-212ENST00000619079 CRYMQ14894 314 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 WASHC4Q2M389 1173 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 SPECC1Q5M775 1068 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 RAB11FIP4Q86YS3 637 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 FMNL3Q8IVF7 1028 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 OR8K1Q8NGG5 319 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 MYD88Q99836 296 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 HDAC6Q9UBN7 1215 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 ODF2LQ9ULJ1 636 aa12.1□□□□□ -0.47
UPF3A-212ENST00000619079 FGAP02671 866 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 GYS1P13807 737 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 NAP1L1P55209 391 aaKnown RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 ACTN3Q08043 901 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 NNTQ13423 1086 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 CCDC40Q4G0X9 1142 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 CEP85LQ5SZL2 805 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 EP400NLQ6ZTU2 488 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 MAGEC3Q8TD91 643 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 N4BP2L2Q92802 583 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 OSBP2Q969R2 916 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 CAPZA3Q96KX2 299 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 EPN3Q9H201 632 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 EHD4Q9H223 541 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 FOXP1Q9H334 677 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 ACTR5Q9H9F9 607 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 ATF5Q9Y2D1 282 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 KRT31Q15323 416 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 HLFQ16534 295 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 EMC10Q5UCC4 262 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 APOA5Q6Q788 366 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 KDM7AQ6ZMT4 941 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 ZNF572Q7Z3I7 529 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 GSPT2Q8IYD1 628 aaKnown RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 TEX11Q8IYF3 940 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 GRAMD1CQ8IYS0 662 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 PLBD2Q8NHP8 589 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 SLC16A10Q8TF71 515 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 CAVIN3Q969G5 261 aa12.09□□□□□ -0.47
UPF3A-212ENST00000619079 RBM28Q9NW13 759 aaKnown RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 REXO2Q9Y3B8 237 aaKnown RBP12.09□□□□□ -0.47
UPF3A-212ENST00000619079 A0A1B0GUA9 196 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 SH2B2O14492 632 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 ZBTB43O43298 467 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 ZMYND10O75800 440 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 TNFRSF8P28908 595 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 CCT6AP40227 531 aaKnown RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 IL15P40933 162 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 COPB1P53618 953 aaKnown RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 STX17P56962 302 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 KIAA1328Q86T90 577 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 IQCA1Q86XH1 822 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 NLGN1Q8N2Q7 840 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 TMEM87BQ96K49 555 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 MTFR1LQ9H019 292 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 ERVV-1B6SEH8 477 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 RASSF9O75901 435 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 MMP1P03956 469 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 EZRP15311 586 aaKnown RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 CYLC1P35663 651 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 SSRP1Q08945 709 aaKnown RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 PDCLQ13371 301 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 NAA35Q5VZE5 725 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms