RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 STAT2P52630 851 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 HERVK_113P62684 666 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 COG2Q14746 738 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 BTNL9Q6UXG8 535 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 LBX2Q6XYB7 198 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 FAM160B2Q86V87 743 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 MICU3Q86XE3 530 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 NUP133Q8WUM0 1156 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 P2RX7Q99572 595 aaKnown RBP23■■□□□ 1.27
UPF3A-211ENST00000618700 RNF186Q9NXI6 227 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 PPP1R9AQ9ULJ8 1098 aa23■■□□□ 1.27
UPF3A-211ENST00000618700 GOLGA8BA8MQT2 603 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 CA12O43570 354 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 GOLGA8HP0CJ92 632 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 RXRAP19793 462 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 VASPP50552 380 aaPredicted RBP22.99■■□□□ 1.27
UPF3A-211ENST00000618700 TTBK2Q6IQ55 1244 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 SYNE3Q6ZMZ3 975 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 RAB11FIP4Q86YS3 637 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 STAG2Q8N3U4 1231 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 SLF1Q9BQI6 1058 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 GPCPD1Q9NPB8 672 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 SAGE1Q9NXZ1 904 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 ISY1Q9ULR0 285 aaKnown RBP22.99■■□□□ 1.27
UPF3A-211ENST00000618700 HPS5Q9UPZ3 1129 aa22.99■■□□□ 1.27
UPF3A-211ENST00000618700 KIF5BP33176 963 aa22.98■■□□□ 1.27
UPF3A-211ENST00000618700 CRHR2Q13324 411 aa22.98■■□□□ 1.27
UPF3A-211ENST00000618700 POTEEQ6S8J3 1075 aa22.98■■□□□ 1.27
UPF3A-211ENST00000618700 CTCFLQ8NI51 663 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-211ENST00000618700 GTF3C2Q8WUA4 911 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-211ENST00000618700 CHURC1Q8WUH1 139 aa22.98■■□□□ 1.27
UPF3A-211ENST00000618700 ATG4CQ96DT6 458 aa22.98■■□□□ 1.27
UPF3A-211ENST00000618700 ZNF274Q96GC6 653 aaPredicted RBP22.98■■□□□ 1.27
UPF3A-211ENST00000618700 ADAMTS5Q9UNA0 930 aa22.98■■□□□ 1.27
UPF3A-211ENST00000618700 PDIA3P30101 505 aaKnown RBP22.97■■□□□ 1.27
UPF3A-211ENST00000618700 MNX1P50219 401 aaPredicted RBP22.97■■□□□ 1.27
UPF3A-211ENST00000618700 PRPF38AQ8NAV1 312 aaKnown RBP22.97■■□□□ 1.27
UPF3A-211ENST00000618700 FANCBQ8NB91 859 aa22.97■■□□□ 1.27
UPF3A-211ENST00000618700 LARP6Q9BRS8 491 aaKnown RBP22.97■■□□□ 1.27
UPF3A-211ENST00000618700 ZFYVE28Q9HCC9 887 aa22.97■■□□□ 1.27
UPF3A-211ENST00000618700 HOXC10Q9NYD6 342 aa22.97■■□□□ 1.27
UPF3A-211ENST00000618700 GOLGA8AA7E2F4 631 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 KLRF2D3W0D1 207 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 TLR2O60603 784 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 TRPA1O75762 1119 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 SLC16A2P36021 539 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 SLC35G1Q2M3R5 365 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 SYDE2Q5VT97 1194 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 CCDC144CPQ8IYA2 1237 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 SMCR8Q8TEV9 937 aaPredicted RBP22.96■■□□□ 1.27
UPF3A-211ENST00000618700 KIFC2Q96AC6 838 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 FAM217BQ9NTX9 383 aaPredicted RBP22.96■■□□□ 1.27
UPF3A-211ENST00000618700 PRR12Q9ULL5 1215 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 TPCN1Q9ULQ1 816 aa22.96■■□□□ 1.27
UPF3A-211ENST00000618700 VWA5AO00534 786 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 ST18O60284 1047 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 GCLCP48506 637 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-211ENST00000618700 METAP2P50579 478 aaKnown RBP eCLIP22.95■■□□□ 1.26
UPF3A-211ENST00000618700 IKQ13123 557 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-211ENST00000618700 PPP2R5BQ15173 497 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 RTN1Q16799 776 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 REPS2Q8NFH8 660 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 UBA5Q9GZZ9 404 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 CPVLQ9H3G5 476 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 R3HDMLQ9H3Y0 253 aa22.95■■□□□ 1.26
UPF3A-211ENST00000618700 RBM28Q9NW13 759 aaKnown RBP22.95■■□□□ 1.26
UPF3A-211ENST00000618700 NAP1L2Q9ULW6 460 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-211ENST00000618700 CTCFP49711 727 aaPredicted RBP22.94■■□□□ 1.26
UPF3A-211ENST00000618700 GNAQP50148 359 aa22.94■■□□□ 1.26
UPF3A-211ENST00000618700 C17orf99Q6UX52 265 aa22.94■■□□□ 1.26
UPF3A-211ENST00000618700 TMTC3Q6ZXV5 915 aa22.94■■□□□ 1.26
UPF3A-211ENST00000618700 MB21D1Q8N884 522 aa22.94■■□□□ 1.26
UPF3A-211ENST00000618700 BEGAINQ9BUH8 593 aa22.94■■□□□ 1.26
UPF3A-211ENST00000618700 SLC38A10Q9HBR0 1119 aa22.94■■□□□ 1.26
UPF3A-211ENST00000618700 CNMDO75829 334 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 PLEKHA8P1O95397 391 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 CD2BP2O95400 341 aaKnown RBP22.93■■□□□ 1.26
UPF3A-211ENST00000618700 TBC1D8O95759 1140 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 FDX1P10109 184 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 BCRP11274 1271 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 CDC27P30260 824 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 NBPF11Q86T75 865 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 SPZ1Q9BXG8 430 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 RANBP17Q9H2T7 1088 aaKnown RBP22.93■■□□□ 1.26
UPF3A-211ENST00000618700 TXNRD2Q9NNW7 524 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 RBPJLQ9UBG7 517 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 MORF4L1Q9UBU8 362 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 RABGAP1Q9Y3P9 1069 aa22.93■■□□□ 1.26
UPF3A-211ENST00000618700 COL11A1P12107 1806 aaPredicted RBP22.92■■□□□ 1.26
UPF3A-211ENST00000618700 CYTH3O43739 400 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 LARGE1O95461 756 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 HSPA8P11142 646 aaKnown RBP22.92■■□□□ 1.26
UPF3A-211ENST00000618700 SMARCA1P28370 1054 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 FAM110CQ1W6H9 321 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 NOL8Q76FK4 1167 aaKnown RBP22.92■■□□□ 1.26
UPF3A-211ENST00000618700 ADGRF4Q8IZF3 695 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 SRBD1Q8N5C6 995 aaKnown RBP22.92■■□□□ 1.26
UPF3A-211ENST00000618700 LZTS2Q9BRK4 669 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 RIOX1Q9H6W3 641 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 BTBD7Q9P203 1132 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms