RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 MIGA2Q7L4E1 593 aa15.54■□□□□ 0.08
CIITA-213ENST00000618327 ZNF713Q8N859 430 aaPredicted RBP15.54■□□□□ 0.08
CIITA-213ENST00000618327 ALS2CR12Q96Q35 445 aa15.54■□□□□ 0.08
CIITA-213ENST00000618327 NFAT5O94916 1531 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 GAS7O60861 476 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 IGSF3O75054 1194 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 DESP17661 470 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 LONP1P36776 959 aaKnown RBP15.53■□□□□ 0.08
CIITA-213ENST00000618327 ZRSR2Q15696 482 aaKnown RBP15.53■□□□□ 0.08
CIITA-213ENST00000618327 DDX25Q9UHL0 483 aaKnown RBP15.53■□□□□ 0.08
CIITA-213ENST00000618327 NMT2O60551 498 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 RCAN1P53805 252 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 EXOSC10Q01780 885 aaKnown RBP15.53■□□□□ 0.08
CIITA-213ENST00000618327 SYMPKQ92797 1274 aaKnown RBP15.53■□□□□ 0.08
CIITA-213ENST00000618327 TMEM47Q9BQJ4 181 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 DNAI2Q9GZS0 605 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 ZMYND15Q9H091 742 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 DNA2P51530 1060 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 CEP135Q66GS9 1140 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 TBC1D5Q92609 795 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 VPS16Q9H269 839 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 LUC7L2Q9Y383 392 aaKnown RBP15.53■□□□□ 0.08
CIITA-213ENST00000618327 IVNS1ABPQ9Y6Y0 642 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 DKC1O60832 514 aaKnown RBP eCLIP15.53■□□□□ 0.08
CIITA-213ENST00000618327 TMEM179Q6ZVK1 233 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 NEK11Q8NG66 645 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 SLC4A9Q96Q91 983 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 GJB4Q9NTQ9 266 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 PNMA2Q9UL42 364 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 CCPG1Q9ULG6 757 aa15.53■□□□□ 0.08
CIITA-213ENST00000618327 ZNF75DP51815 510 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 SGMS1Q86VZ5 419 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 DHX37Q8IY37 1157 aaKnown RBP15.52■□□□□ 0.08
CIITA-213ENST00000618327 NOC4LQ9BVI4 516 aaKnown RBP15.52■□□□□ 0.08
CIITA-213ENST00000618327 CSRNP2Q9H175 543 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 SLIT3O75094 1523 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 MCF2L2Q86YR7 1114 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 COA7Q96BR5 231 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 SALL3Q9BXA9 1300 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 KDM3AQ9Y4C1 1321 aa15.52■□□□□ 0.08
CIITA-213ENST00000618327 ORC4O43929 436 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 RAD51AP2Q09MP3 1159 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 TBC1D8BQ0IIM8 1120 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 SEPT7Q16181 437 aaKnown RBP15.52■□□□□ 0.07
CIITA-213ENST00000618327 SUPT20HL1Q3ZLR7 823 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 SLFN12Q8IYM2 578 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 UBE2Q2Q8WVN8 375 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 NOP2P46087 812 aaKnown RBP15.52■□□□□ 0.07
CIITA-213ENST00000618327 EHBP1Q8NDI1 1231 aa15.52■□□□□ 0.07
CIITA-213ENST00000618327 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.52■□□□□ 0.07
CIITA-213ENST00000618327 XRN1Q8IZH2 1706 aaKnown RBP15.51■□□□□ 0.07
CIITA-213ENST00000618327 SLC15A2Q16348 729 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 CNGA4Q8IV77 575 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 LAD1O00515 517 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 GH2P01242 217 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 PAFAH1B1P43034 410 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 TRMT44Q8IYL2 757 aaKnown RBP15.51■□□□□ 0.07
CIITA-213ENST00000618327 ZHX1Q9UKY1 873 aaPredicted RBP15.51■□□□□ 0.07
CIITA-213ENST00000618327 STK36Q9NRP7 1315 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 AKAP12Q02952 1782 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 CCDC175P0C221 793 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 CDC27P30260 824 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 CETN2P41208 172 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 C12orf60Q5U649 245 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 TPH2Q8IWU9 490 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 TRERF1Q96PN7 1200 aa15.51■□□□□ 0.07
CIITA-213ENST00000618327 PHACTR2O75167 634 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 STAT2P52630 851 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 SMTNP53814 917 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 GIMAP7Q8NHV1 300 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 SMCR8Q8TEV9 937 aaPredicted RBP15.5■□□□□ 0.07
CIITA-213ENST00000618327 IGSF22Q8N9C0 903 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 TBCKQ8TEA7 893 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 NELFBQ8WX92 580 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 CEP95Q96GE4 821 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 CCDC42Q96M95 316 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 A0A0G2JLW4 131 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 SHTN1A0MZ66 631 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 CETN3O15182 167 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 USP14P54578 494 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 DCAF17Q5H9S7 520 aaPredicted RBP15.5■□□□□ 0.07
CIITA-213ENST00000618327 NLRX1Q86UT6 975 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 TDRD7Q8NHU6 1098 aaKnown RBP15.5■□□□□ 0.07
CIITA-213ENST00000618327 PAGR1Q9BTK6 254 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 DAGLAQ9Y4D2 1042 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 ARID5AQ03989 594 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 EZH2Q15910 746 aaKnown RBP15.5■□□□□ 0.07
CIITA-213ENST00000618327 SYDE2Q5VT97 1194 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 ARHGEF16Q5VV41 709 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 COL23A1Q86Y22 540 aaPredicted RBP15.5■□□□□ 0.07
CIITA-213ENST00000618327 TBC1D7Q9P0N9 293 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 FRMD4BQ9Y2L6 1034 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 PAXBP1Q9Y5B6 917 aa15.5■□□□□ 0.07
CIITA-213ENST00000618327 CCDC169A6NNP5 214 aa15.49■□□□□ 0.07
CIITA-213ENST00000618327 AKR1B15C9JRZ8 316 aaPredicted RBP15.49■□□□□ 0.07
CIITA-213ENST00000618327 EPB41P11171 864 aaKnown RBP15.49■□□□□ 0.07
CIITA-213ENST00000618327 CLCN1P35523 988 aa15.49■□□□□ 0.07
CIITA-213ENST00000618327 STRIP1Q5VSL9 837 aa15.49■□□□□ 0.07
CIITA-213ENST00000618327 GAS2L3Q86XJ1 694 aa15.49■□□□□ 0.07
CIITA-213ENST00000618327 TRIML1Q8N9V2 468 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms