RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 PARP1P09874 1014 aaKnown RBP14.73□□□□□ -0.05
MSH6-214ENST00000616033 IFNAR1P17181 557 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 SEC24CP53992 1094 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 HERVK_113P62684 666 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 AMPD2Q01433 879 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 CRACR2BQ8N4Y2 399 aaPredicted RBP14.73□□□□□ -0.05
MSH6-214ENST00000616033 NOC3LQ8WTT2 800 aaKnown RBP14.73□□□□□ -0.05
MSH6-214ENST00000616033 EPB41L4AQ9HCS5 686 aaPredicted RBP14.73□□□□□ -0.05
MSH6-214ENST00000616033 ZSCAN5CA6NGD5 496 aaPredicted RBP14.73□□□□□ -0.05
MSH6-214ENST00000616033 MOCS3O95396 460 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 NFRKBQ6P4R8 1299 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 HEG1Q9ULI3 1381 aa14.73□□□□□ -0.05
MSH6-214ENST00000616033 TOPAZ1Q8N9V7 1692 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 TULP1O00294 542 aaPredicted RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 MTIF2P46199 727 aaKnown RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 PMS1P54277 932 aaKnown RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 CDKAL1Q5VV42 579 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 CCNI2Q6ZMN8 369 aaPredicted RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 BRINP3Q76B58 766 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 TRAPPC11Q7Z392 1133 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 XBP1P17861 261 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 AKNAD1Q5T1N1 836 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 NAIF1Q69YI7 327 aaPredicted RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 PPANQ9NQ55 473 aaKnown RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 FAM207AQ9NSI2 230 aaPredicted RBP14.72□□□□□ -0.05
MSH6-214ENST00000616033 LRP2BPQ9P2M1 347 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 KRT2P35908 639 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 PEX19P40855 299 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 TBC1D8BQ0IIM8 1120 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 KIF5AQ12840 1032 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 TTC38Q5R3I4 469 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 MS4A14Q96JA4 679 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 SLAIN2Q9P270 581 aa14.72□□□□□ -0.05
MSH6-214ENST00000616033 PBX1P40424 430 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 STAT6P42226 847 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 NLRP5P59047 1200 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 MAATS1Q7Z4T9 603 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 TICAM2Q86XR7 235 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 LCORLQ8N3X6 602 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 HPS3Q969F9 1004 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 STRBPQ96SI9 672 aaKnown RBP14.71□□□□□ -0.05
MSH6-214ENST00000616033 HAUS4Q9H6D7 363 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 XDHP47989 1333 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 IRF6O14896 467 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 VEGFAP15692 232 aaPredicted RBP14.71□□□□□ -0.05
MSH6-214ENST00000616033 RDXP35241 583 aaKnown RBP14.71□□□□□ -0.05
MSH6-214ENST00000616033 ARID5AQ03989 594 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 WDR93Q6P2C0 686 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 TSEN2Q8NCE0 465 aaKnown RBP14.71□□□□□ -0.05
MSH6-214ENST00000616033 CCDC42Q96M95 316 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 FOXP1Q9H334 677 aaPredicted RBP14.71□□□□□ -0.05
MSH6-214ENST00000616033 GPR108Q9NPR9 543 aa14.71□□□□□ -0.05
MSH6-214ENST00000616033 FAM237AA0A1B0GTK4 181 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 HSF2BPO75031 334 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 IFT88Q13099 833 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 SPA17Q15506 151 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 CCDC178Q5BJE1 867 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 NT5DC1Q5TFE4 455 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 ARMC3Q5W041 872 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 GBP6Q6ZN66 633 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 TMC4Q7Z404 712 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 NHEJ1Q9H9Q4 299 aaPredicted RBP14.7□□□□□ -0.06
MSH6-214ENST00000616033 CKAP4Q07065 602 aaKnown RBP14.7□□□□□ -0.06
MSH6-214ENST00000616033 GSDMAQ96QA5 445 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 MYH10P35580 1976 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 AKR1B10O60218 316 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 PPFIA1Q13136 1202 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 SGSM3Q96HU1 749 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 MMRN2Q9H8L6 949 aa14.7□□□□□ -0.06
MSH6-214ENST00000616033 RPS6KA5O75582 802 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 RPN1P04843 607 aaKnown RBP14.69□□□□□ -0.06
MSH6-214ENST00000616033 TUBB2AQ13885 445 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 C2CD5Q86YS7 1000 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 CCDC51Q96ER9 411 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 CCDC43Q96MW1 224 aaKnown RBP14.69□□□□□ -0.06
MSH6-214ENST00000616033 SCLT1Q96NL6 688 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 UIMC1Q96RL1 719 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 TUBB2BQ9BVA1 445 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 CAPN6Q9Y6Q1 641 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 TNKSO95271 1327 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 ADAMTS3O15072 1205 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 NKRFO15226 690 aaKnown RBP eCLIP14.69□□□□□ -0.06
MSH6-214ENST00000616033 PAX7P23759 505 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 MCM3P25205 808 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 CYLC1P35663 651 aaPredicted RBP14.69□□□□□ -0.06
MSH6-214ENST00000616033 E2F5Q15329 346 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 KCNV1Q6PIU1 500 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 EGFL6Q8IUX8 553 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 DONSONQ9NYP3 566 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 NFU1Q9UMS0 254 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 KDM4FA0A1W2PPD8 638 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 HLTFQ14527 1009 aaKnown RBP eCLIP14.69□□□□□ -0.062e-7■■■□□ 16.9
MSH6-214ENST00000616033 MB21D1Q8N884 522 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 SHISA4Q96DD7 197 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 DCAF5Q96JK2 942 aa14.69□□□□□ -0.06
MSH6-214ENST00000616033 PACSIN2Q9UNF0 486 aaPredicted RBP14.69□□□□□ -0.06
MSH6-214ENST00000616033 KDM6AO15550 1401 aaPredicted RBP14.68□□□□□ -0.06
MSH6-214ENST00000616033 NMT2O60551 498 aa14.68□□□□□ -0.06
MSH6-214ENST00000616033 KRT83P78385 493 aa14.68□□□□□ -0.06
MSH6-214ENST00000616033 SATB1Q01826 763 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms