RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 UBA5Q9GZZ9 404 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 HOXC10Q9NYD6 342 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 BTBD19C9JJ37 291 aa17.07■□□□□ 0.32
CD48-203ENST00000613788 PLEKHA8P1O95397 391 aa17.07■□□□□ 0.32
CD48-203ENST00000613788 IFNAR1P17181 557 aa17.07■□□□□ 0.32
CD48-203ENST00000613788 KIF23Q02241 960 aaPredicted RBP17.07■□□□□ 0.32
CD48-203ENST00000613788 SRBD1Q8N5C6 995 aaKnown RBP17.07■□□□□ 0.32
CD48-203ENST00000613788 SLF1Q9BQI6 1058 aa17.07■□□□□ 0.32
CD48-203ENST00000613788 LLPHQ9BRT6 129 aaKnown RBP17.07■□□□□ 0.32
CD48-203ENST00000613788 SPZ1Q9BXG8 430 aa17.07■□□□□ 0.32
CD48-203ENST00000613788 PNMA3Q9UL41 463 aa17.07■□□□□ 0.32
CD48-203ENST00000613788 FDX1P10109 184 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 SLC16A2P36021 539 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 TM4SF4P48230 202 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 IRX3P78415 501 aaPredicted RBP17.06■□□□□ 0.32
CD48-203ENST00000613788 NTRK3Q16288 839 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 SYDE2Q5VT97 1194 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 CCDC82Q8N4S0 544 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 KIFC2Q96AC6 838 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 RIOX1Q9H6W3 641 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 ZCCHC17Q9NP64 241 aaKnown RBP17.06■□□□□ 0.32
CD48-203ENST00000613788 MYPNQ86TC9 1320 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 WDR33Q9C0J8 1336 aaKnown RBP17.06■□□□□ 0.32
CD48-203ENST00000613788 PDHXO00330 501 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 DSG3P32926 999 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 MAP2K2P36507 400 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 HTRA3P83110 453 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 AKAP17AQ02040 695 aaKnown RBP17.06■□□□□ 0.32
CD48-203ENST00000613788 CUL4AQ13619 759 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 TRIM22Q8IYM9 498 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 ADGRF4Q8IZF3 695 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 CMTR1Q8N1G2 835 aaKnown RBP17.06■□□□□ 0.32
CD48-203ENST00000613788 PTPN18Q99952 460 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 VAT1LQ9HCJ6 419 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 FBXO28Q9NVF7 368 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 PPP1R9AQ9ULJ8 1098 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 PRR12Q9ULL5 1215 aa17.06■□□□□ 0.32
CD48-203ENST00000613788 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.06■□□□□ 0.32
CD48-203ENST00000613788 HSP90AA1P07900 732 aaKnown RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 VEGFBP49765 207 aa17.05■□□□□ 0.32
CD48-203ENST00000613788 SSRP1Q08945 709 aaKnown RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 FUT2Q10981 343 aa17.05■□□□□ 0.32
CD48-203ENST00000613788 SAMD1Q6SPF0 538 aaPredicted RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 NBPF11Q86T75 865 aa17.05■□□□□ 0.32
CD48-203ENST00000613788 IFNL1Q8IU54 200 aa17.05■□□□□ 0.32
CD48-203ENST00000613788 RRP36Q96EU6 259 aaKnown RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 ASCC2Q9H1I8 757 aaPredicted RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 CPVLQ9H3G5 476 aa17.05■□□□□ 0.32
CD48-203ENST00000613788 RBM27Q9P2N5 1060 aaKnown RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 CTDP1Q9Y5B0 961 aaPredicted RBP17.05■□□□□ 0.32
CD48-203ENST00000613788 PTPRFP10586 1907 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 CYTH3O43739 400 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 AOC2O75106 756 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 ZBED4O75132 1171 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 ST3GAL1Q11201 340 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 FAM43AQ8N2R8 423 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 INTS4Q96HW7 963 aaKnown RBP17.04■□□□□ 0.32
CD48-203ENST00000613788 RNF26Q9BY78 433 aaPredicted RBP17.04■□□□□ 0.32
CD48-203ENST00000613788 JMJD4Q9H9V9 463 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 V9GY48 417 aaPredicted RBP17.04■□□□□ 0.32
CD48-203ENST00000613788 LOC285556D6RIA3 1793 aa17.04■□□□□ 0.32
CD48-203ENST00000613788 PRPF3O43395 683 aaKnown RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 FMNL1O95466 1100 aaPredicted RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 CTDNEP1O95476 244 aa17.03■□□□□ 0.32
CD48-203ENST00000613788 HMGN5P82970 282 aaKnown RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 NSUN7Q8NE18 718 aaKnown RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 GTF3C2Q8WUA4 911 aaPredicted RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 PHKBQ93100 1093 aa17.03■□□□□ 0.32
CD48-203ENST00000613788 ZIC5Q96T25 663 aa17.03■□□□□ 0.32
CD48-203ENST00000613788 P2RX7Q99572 595 aaKnown RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 SLC26A6Q9BXS9 759 aa17.03■□□□□ 0.32
CD48-203ENST00000613788 DAXXQ9UER7 740 aaPredicted RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 SEC63Q9UGP8 760 aaKnown RBP17.03■□□□□ 0.32
CD48-203ENST00000613788 CNTNAP5Q8WYK1 1306 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 PTPDC1A2A3K4 754 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 SPDYE16A6NNV3 312 aaPredicted RBP17.02■□□□□ 0.32
CD48-203ENST00000613788 IGF2BP3O00425 579 aaKnown RBP eCLIP17.02■□□□□ 0.32
CD48-203ENST00000613788 VWA5AO00534 786 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 ZBTB5O15062 677 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 ALDH1A1P00352 501 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 HERVK_113P62684 666 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 LBX2Q6XYB7 198 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 MB21D1Q8N884 522 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 ATG4CQ96DT6 458 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 MTMR8Q96EF0 704 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 PIGSQ96S52 555 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 PARK7Q99497 189 aaKnown RBP17.02■□□□□ 0.32
CD48-203ENST00000613788 RANBP17Q9H2T7 1088 aaKnown RBP17.02■□□□□ 0.32
CD48-203ENST00000613788 ADAMTS5Q9UNA0 930 aa17.02■□□□□ 0.32
CD48-203ENST00000613788 PNMA6FA0A0J9YX94 578 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 TRAF1Q13077 416 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 SLC35G1Q2M3R5 365 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 HOMER1Q86YM7 354 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 SMARCC2Q8TAQ2 1214 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 SMCR8Q8TEV9 937 aaPredicted RBP17.01■□□□□ 0.31
CD48-203ENST00000613788 WASF1Q92558 559 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 SLC38A10Q9HBR0 1119 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 ORC3Q9UBD5 711 aaPredicted RBP17.01■□□□□ 0.31
CD48-203ENST00000613788 PNMA2Q9UL42 364 aa17.01■□□□□ 0.31
CD48-203ENST00000613788 SMC3Q9UQE7 1217 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms