RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 COL9A3Q14050 684 aaPredicted RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 KIF22Q14807 665 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 ARHGEF6Q15052 776 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 ASPRV1Q53RT3 343 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 NOM1Q5C9Z4 860 aaKnown RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 SAMD1Q6SPF0 538 aaPredicted RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 Q6ZUG5 572 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 PRPF38AQ8NAV1 312 aaKnown RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 CTCFLQ8NI51 663 aaPredicted RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 IGDCC4Q8TDY8 1250 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 TNPO1Q92973 898 aaKnown RBP11.72□□□□□ -0.53
UPF1-213ENST00000601981 SLF1Q9BQI6 1058 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 LY9Q9HBG7 655 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 TPCN1Q9ULQ1 816 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 SLC12A7Q9Y666 1083 aa11.72□□□□□ -0.53
UPF1-213ENST00000601981 CASP8AP2Q9UKL3 1982 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 TMEM232C9JQI7 657 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 PLA2G6O60733 806 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 HSPA8P11142 646 aaKnown RBP11.71□□□□□ -0.53
UPF1-213ENST00000601981 DSG3P32926 999 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 CCNA1P78396 465 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 ME3Q16798 604 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 FAM110CQ1W6H9 321 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 KIAA1755Q5JYT7 1200 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 LBX2Q6XYB7 198 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 CLEC17AQ6ZS10 378 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 SGMS1Q86VZ5 419 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 CCAR1Q8IX12 1150 aaKnown RBP11.71□□□□□ -0.53
UPF1-213ENST00000601981 NKX2-3Q8TAU0 364 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 GBP4Q96PP9 640 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 MAP3K14Q99558 947 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 NUP88Q99567 741 aaPredicted RBP11.71□□□□□ -0.53
UPF1-213ENST00000601981 P2RX7Q99572 595 aaKnown RBP11.71□□□□□ -0.53
UPF1-213ENST00000601981 LRRC2Q9BYS8 371 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 PPP1R9AQ9ULJ8 1098 aa11.71□□□□□ -0.53
UPF1-213ENST00000601981 FRMPD2Q68DX3 1309 aaPredicted RBP11.7□□□□□ -0.54
UPF1-213ENST00000601981 SPDYE16A6NNV3 312 aaPredicted RBP11.7□□□□□ -0.54
UPF1-213ENST00000601981 FKTNO75072 461 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 ZBED4O75132 1171 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 SNHG28P0DPA3 235 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 RCAN1P53805 252 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 SP3Q02447 781 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 ZNF543Q08ER8 600 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 ST3GAL1Q11201 340 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 KCTD1Q719H9 257 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 CCDC83Q8IWF9 413 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 ZNF654Q8IZM8 581 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 GPRC5AQ8NFJ5 357 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 NUP133Q8WUM0 1156 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 KIFC2Q96AC6 838 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 ERO1AQ96HE7 468 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 TCEANC2Q96MN5 208 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 PAGR1Q9BTK6 254 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 CPA4Q9UI42 421 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 PNMA2Q9UL42 364 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 NAP1L2Q9ULW6 460 aaPredicted RBP11.7□□□□□ -0.54
UPF1-213ENST00000601981 SMC3Q9UQE7 1217 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 RABGAP1Q9Y3P9 1069 aa11.7□□□□□ -0.54
UPF1-213ENST00000601981 ADGRA2Q96PE1 1338 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 DDX11L8A8MPP1 907 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 GPR25O00155 361 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 ZBTB43O43298 467 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 DHX16O60231 1041 aaKnown RBP11.69□□□□□ -0.54
UPF1-213ENST00000601981 BRD1O95696 1058 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 PTMSP20962 102 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 MCM4P33991 863 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 COPB2P35606 906 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 GNAQP50148 359 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 GRM4Q14833 912 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 PPP2R5BQ15173 497 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 C17orf99Q6UX52 265 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 ANKRD13CQ8N6S4 541 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 BRF1Q92994 677 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 GTF3C6Q969F1 213 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 CHMP4CQ96CF2 233 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 LZTS2Q9BRK4 669 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 LARP6Q9BRS8 491 aaKnown RBP11.69□□□□□ -0.54
UPF1-213ENST00000601981 GPCPD1Q9NPB8 672 aa11.69□□□□□ -0.54
UPF1-213ENST00000601981 RBM28Q9NW13 759 aaKnown RBP11.69□□□□□ -0.54
UPF1-213ENST00000601981 BAZ2BQ9UIF8 2168 aaKnown RBP11.68□□□□□ -0.54
UPF1-213ENST00000601981 KLF18A0A0U1RQI7 1052 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 CCDC196A0A1B0GTZ2 297 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 VWA5AO00534 786 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 PFKFB2O60825 505 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 BCRP11274 1271 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 PDIA4P13667 645 aaKnown RBP11.68□□□□□ -0.54
UPF1-213ENST00000601981 OAZ1P54368 228 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 EVCP57679 992 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 ERVK-9P63128 1117 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 ERVK-24P63145 666 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 TROAPQ12815 778 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 PLS1Q14651 629 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 SYDE2Q5VT97 1194 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 APOA5Q6Q788 366 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 BTNL9Q6UXG8 535 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 MICU3Q86XE3 530 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 ATG4CQ96DT6 458 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 FBXO28Q9NVF7 368 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 MORF4L1Q9UBU8 362 aa11.68□□□□□ -0.54
UPF1-213ENST00000601981 TSKSQ9UJT2 592 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms