RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 IRX6P78412 446 aaPredicted RBP30.85■■■□□ 2.53
PNKP-216ENST00000601816 HABP4Q5JVS0 413 aaKnown RBP30.85■■■□□ 2.53
PNKP-216ENST00000601816 DDX20Q9UHI6 824 aaKnown RBP30.85■■■□□ 2.53
PNKP-216ENST00000601816 ISY1Q9ULR0 285 aaKnown RBP30.85■■■□□ 2.53
PNKP-216ENST00000601816 CYBAP13498 195 aa30.84■■■□□ 2.53
PNKP-216ENST00000601816 SNRNP48Q6IEG0 339 aaKnown RBP30.84■■■□□ 2.53
PNKP-216ENST00000601816 TRPV1Q8NER1 839 aa30.84■■■□□ 2.53
PNKP-216ENST00000601816 MAML3Q96JK9 1138 aa30.84■■■□□ 2.53
PNKP-216ENST00000601816 TOMM22Q9NS69 142 aa30.84■■■□□ 2.53
PNKP-216ENST00000601816 DIAPH3Q9NSV4 1193 aa30.84■■■□□ 2.53
PNKP-216ENST00000601816 NMT2O60551 498 aa30.83■■■□□ 2.53
PNKP-216ENST00000601816 FGRP09769 529 aa30.83■■■□□ 2.53
PNKP-216ENST00000601816 GMCL1Q96IK5 515 aa30.83■■■□□ 2.53
PNKP-216ENST00000601816 IL17RBQ9NRM6 502 aa30.83■■■□□ 2.53
PNKP-216ENST00000601816 COLQQ9Y215 455 aaPredicted RBP30.83■■■□□ 2.53
PNKP-216ENST00000601816 HIP1O00291 1037 aa30.82■■■□□ 2.52
PNKP-216ENST00000601816 RRP12Q5JTH9 1297 aaKnown RBP30.82■■■□□ 2.52
PNKP-216ENST00000601816 CPXCR1Q8N123 301 aa30.82■■■□□ 2.52
PNKP-216ENST00000601816 SLC38A10Q9HBR0 1119 aa30.82■■■□□ 2.52
PNKP-216ENST00000601816 CEP290O15078 2479 aa30.81■■■□□ 2.52
PNKP-216ENST00000601816 ATP2A1O14983 1001 aa30.81■■■□□ 2.52
PNKP-216ENST00000601816 PGK2P07205 417 aa30.81■■■□□ 2.52
PNKP-216ENST00000601816 SLC1A4P43007 532 aa30.81■■■□□ 2.52
PNKP-216ENST00000601816 HAND2P61296 217 aa30.81■■■□□ 2.52
PNKP-216ENST00000601816 TMEM232C9JQI7 657 aa30.8■■■□□ 2.52
PNKP-216ENST00000601816 SLC4A3P48751 1232 aa30.8■■■□□ 2.52
PNKP-216ENST00000601816 STAT2P52630 851 aa30.8■■■□□ 2.52
PNKP-216ENST00000601816 CWC27Q6UX04 472 aaKnown RBP30.8■■■□□ 2.52
PNKP-216ENST00000601816 RAVER2Q9HCJ3 691 aaKnown RBP30.8■■■□□ 2.52
PNKP-216ENST00000601816 RIPK3Q9Y572 518 aa30.8■■■□□ 2.52
PNKP-216ENST00000601816 MCCP23508 829 aa30.79■■■□□ 2.52
PNKP-216ENST00000601816 IKQ13123 557 aaPredicted RBP30.79■■■□□ 2.52
PNKP-216ENST00000601816 CHRDL2Q6WN34 429 aa30.79■■■□□ 2.52
PNKP-216ENST00000601816 FAM160B2Q86V87 743 aa30.79■■■□□ 2.52
PNKP-216ENST00000601816 CHURC1Q8WUH1 139 aa30.79■■■□□ 2.52
PNKP-216ENST00000601816 CHMP4CQ96CF2 233 aa30.79■■■□□ 2.52
PNKP-216ENST00000601816 DIS3Q9Y2L1 958 aaKnown RBP30.79■■■□□ 2.52
PNKP-216ENST00000601816 FRMPD3Q5JV73 1810 aa30.79■■■□□ 2.52
PNKP-216ENST00000601816 PFASO15067 1338 aa30.78■■■□□ 2.52
PNKP-216ENST00000601816 FDX1P10109 184 aa30.78■■■□□ 2.52
PNKP-216ENST00000601816 PCP11498 1178 aaKnown RBP30.78■■■□□ 2.52
PNKP-216ENST00000601816 COL6A1P12109 1028 aa30.78■■■□□ 2.52
PNKP-216ENST00000601816 NOVP48745 357 aa30.78■■■□□ 2.52
PNKP-216ENST00000601816 OAZ1P54368 228 aa30.78■■■□□ 2.52
PNKP-216ENST00000601816 ZNF792Q3KQV3 632 aa30.78■■■□□ 2.52
PNKP-216ENST00000601816 PDE4AP27815 886 aa30.77■■■□□ 2.52
PNKP-216ENST00000601816 C7orf61Q8IZ16 206 aa30.77■■■□□ 2.52
PNKP-216ENST00000601816 STAG1Q8WVM7 1258 aa30.77■■■□□ 2.52
PNKP-216ENST00000601816 ALPK3Q96L96 1907 aa30.77■■■□□ 2.52
PNKP-216ENST00000601816 ZNFX1Q9P2E3 1918 aaKnown RBP30.77■■■□□ 2.52
PNKP-216ENST00000601816 SEPT4O43236 478 aa30.76■■■□□ 2.51
PNKP-216ENST00000601816 PRAMEF19Q5SWL8 479 aa30.76■■■□□ 2.51
PNKP-216ENST00000601816 AKNAD1Q5T1N1 836 aa30.76■■■□□ 2.51
PNKP-216ENST00000601816 MFSD6Q6ZSS7 791 aa30.76■■■□□ 2.51
PNKP-216ENST00000601816 DDX11Q96FC9 970 aa30.76■■■□□ 2.51
PNKP-216ENST00000601816 RNF41Q9H4P4 317 aaPredicted RBP30.76■■■□□ 2.51
PNKP-216ENST00000601816 MTMR7Q9Y216 660 aa30.76■■■□□ 2.51
PNKP-216ENST00000601816 RCSD1Q6JBY9 416 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 KCTD1Q719H9 257 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 TBC1D10CQ8IV04 446 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 TINF2Q9BSI4 451 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 TCP11L1Q9NUJ3 509 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 FBXO40Q9UH90 709 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 NRBP1Q9UHY1 535 aa30.75■■■□□ 2.51
PNKP-216ENST00000601816 PLA2G6O60733 806 aa30.74■■■□□ 2.51
PNKP-216ENST00000601816 CHST13Q8NET6 341 aa30.74■■■□□ 2.51
PNKP-216ENST00000601816 DNM1LO00429 736 aa30.73■■■□□ 2.51
PNKP-216ENST00000601816 ZNF213O14771 459 aa30.73■■■□□ 2.51
PNKP-216ENST00000601816 TOP1P11387 765 aaKnown RBP30.73■■■□□ 2.51
PNKP-216ENST00000601816 CCDC96Q2M329 555 aa30.73■■■□□ 2.51
PNKP-216ENST00000601816 ANO1Q5XXA6 986 aa30.73■■■□□ 2.51
PNKP-216ENST00000601816 RASGRP2Q7LDG7 609 aa30.73■■■□□ 2.51
PNKP-216ENST00000601816 DCAF4Q8WV16 495 aa30.73■■■□□ 2.51
PNKP-216ENST00000601816 PLXNA1Q9UIW2 1896 aa30.72■■■□□ 2.51
PNKP-216ENST00000601816 DNAJC25-GNG10A0A024R161 153 aa30.72■■■□□ 2.51
PNKP-216ENST00000601816 TTC22Q5TAA0 569 aa30.72■■■□□ 2.51
PNKP-216ENST00000601816 DHX30Q7L2E3 1194 aaKnown RBP eCLIP30.72■■■□□ 2.51
PNKP-216ENST00000601816 ARRDC4Q8NCT1 418 aa30.72■■■□□ 2.51
PNKP-216ENST00000601816 ANKRD35Q8N283 1001 aa30.71■■■□□ 2.51
PNKP-216ENST00000601816 TMEM47Q9BQJ4 181 aa30.71■■■□□ 2.51
PNKP-216ENST00000601816 DSCC1Q9BVC3 393 aa30.71■■■□□ 2.51
PNKP-216ENST00000601816 GSPT1P15170 499 aaKnown RBP30.7■■■□□ 2.51
PNKP-216ENST00000601816 MSL3Q8N5Y2 521 aaKnown RBP30.7■■■□□ 2.51
PNKP-216ENST00000601816 ESR2Q92731 530 aa30.7■■■□□ 2.51
PNKP-216ENST00000601816 SENP6Q9GZR1 1112 aaPredicted RBP30.7■■■□□ 2.51
PNKP-216ENST00000601816 HOMER2Q9NSB8 354 aa30.7■■■□□ 2.51
PNKP-216ENST00000601816 RBM27Q9P2N5 1060 aaKnown RBP30.7■■■□□ 2.51
PNKP-216ENST00000601816 PRR12Q9ULL5 1215 aa30.7■■■□□ 2.51
PNKP-216ENST00000601816 ZMYND8Q9ULU4 1186 aaPredicted RBP30.69■■■□□ 2.5
PNKP-216ENST00000601816 CNPY2Q9Y2B0 182 aa30.69■■■□□ 2.5
PNKP-216ENST00000601816 ZNF536O15090 1300 aa30.69■■■□□ 2.5
PNKP-216ENST00000601816 NEDD4P46934 1319 aa30.69■■■□□ 2.5
PNKP-216ENST00000601816 LAMA4Q16363 1823 aa30.68■■■□□ 2.5
PNKP-216ENST00000601816 LRRC26Q2I0M4 334 aa30.68■■■□□ 2.5
PNKP-216ENST00000601816 GJC2Q5T442 439 aaPredicted RBP30.68■■■□□ 2.5
PNKP-216ENST00000601816 ZNF467Q7Z7K2 595 aaPredicted RBP30.68■■■□□ 2.5
PNKP-216ENST00000601816 AGBL1Q96MI9 1066 aa30.68■■■□□ 2.5
PNKP-216ENST00000601816 TTC14Q96N46 770 aa30.68■■■□□ 2.5
PNKP-216ENST00000601816 PRO3102Q9H379 93 aa30.68■■■□□ 2.5
PNKP-216ENST00000601816 ACAD9Q9H845 621 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms