RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ZKSCAN3Q9BRR0 538 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 TEX13BQ9BXU2 312 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 ZSWIM5Q9P217 1185 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 A0A0G2JMZ2 1700 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 MYCP01106 439 aaPredicted RBP22.72■■□□□ 1.23
UPF1-212ENST00000601689 HMGCRP04035 888 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 CYP21A2P08686 494 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 FCER1AP12319 257 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 OAZ1P54368 228 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 RIOX2Q8IUF8 465 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 APBA2Q99767 749 aa22.72■■□□□ 1.23
UPF1-212ENST00000601689 ZKSCAN1P17029 563 aaPredicted RBP22.71■■□□□ 1.23
UPF1-212ENST00000601689 IFIT1BQ5T764 474 aaKnown RBP22.71■■□□□ 1.23
UPF1-212ENST00000601689 POTEEQ6S8J3 1075 aa22.71■■□□□ 1.23
UPF1-212ENST00000601689 KCTD1Q719H9 257 aa22.71■■□□□ 1.23
UPF1-212ENST00000601689 ABRAQ8N0Z2 381 aa22.71■■□□□ 1.23
UPF1-212ENST00000601689 CPXCR1Q8N123 301 aa22.71■■□□□ 1.23
UPF1-212ENST00000601689 INHAP05111 366 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 ELNP15502 786 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 CAPN2P17655 700 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 SLC4A3P48751 1232 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 GRB14Q14449 540 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 KCTD2Q14681 263 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 MORN1Q5T089 497 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 GPATCH4Q5T3I0 446 aaKnown RBP22.7■■□□□ 1.22
UPF1-212ENST00000601689 SNRNP48Q6IEG0 339 aaKnown RBP22.7■■□□□ 1.22
UPF1-212ENST00000601689 CHMP4CQ96CF2 233 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 RNF208Q9H0X6 261 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 FBXO40Q9UH90 709 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 PNMA2Q9UL42 364 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 TNKSO95271 1327 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 PLXNB2O15031 1838 aa22.7■■□□□ 1.22
UPF1-212ENST00000601689 E7EWF7 191 aa22.69■■□□□ 1.22
UPF1-212ENST00000601689 PNMA1Q8ND90 353 aa22.69■■□□□ 1.22
UPF1-212ENST00000601689 MMP19Q99542 508 aa22.69■■□□□ 1.22
UPF1-212ENST00000601689 SLC38A10Q9HBR0 1119 aa22.69■■□□□ 1.22
UPF1-212ENST00000601689 ZNF214Q9UL59 606 aaPredicted RBP22.69■■□□□ 1.22
UPF1-212ENST00000601689 ATP2A1O14983 1001 aa22.68■■□□□ 1.22
UPF1-212ENST00000601689 MLLT1Q03111 559 aaPredicted RBP22.68■■□□□ 1.22
UPF1-212ENST00000601689 MFSD14CQ5VZR4 134 aa22.68■■□□□ 1.22
UPF1-212ENST00000601689 ANKS1AQ92625 1134 aa22.68■■□□□ 1.22
UPF1-212ENST00000601689 LSG1Q9H089 658 aaKnown RBP22.68■■□□□ 1.22
UPF1-212ENST00000601689 ZNFX1Q9P2E3 1918 aaKnown RBP22.67■■□□□ 1.22
UPF1-212ENST00000601689 IFIT3O14879 490 aaKnown RBP22.67■■□□□ 1.22
UPF1-212ENST00000601689 PDHBP11177 359 aa22.67■■□□□ 1.22
UPF1-212ENST00000601689 CCL5P13501 91 aa22.67■■□□□ 1.22
UPF1-212ENST00000601689 ADORA2AP29274 412 aa22.67■■□□□ 1.22
UPF1-212ENST00000601689 RGS19P49795 217 aa22.67■■□□□ 1.22
UPF1-212ENST00000601689 HMX1Q9NP08 348 aaPredicted RBP22.67■■□□□ 1.22
UPF1-212ENST00000601689 CENPFP49454 3210 aa22.67■■□□□ 1.22
UPF1-212ENST00000601689 KIAA0100Q14667 2235 aaKnown RBP22.67■■□□□ 1.22
UPF1-212ENST00000601689 REC8O95072 547 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 ENAHQ8N8S7 591 aaPredicted RBP22.66■■□□□ 1.22
UPF1-212ENST00000601689 CHST13Q8NET6 341 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 REPS2Q8NFH8 660 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 USP6NLQ92738 828 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 DDX11Q96FC9 970 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 RAVER2Q9HCJ3 691 aaKnown RBP22.66■■□□□ 1.22
UPF1-212ENST00000601689 GPCPD1Q9NPB8 672 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 PRR12Q9ULL5 1215 aa22.66■■□□□ 1.22
UPF1-212ENST00000601689 FRMPD2Q68DX3 1309 aaPredicted RBP22.65■■□□□ 1.22
UPF1-212ENST00000601689 RPTORQ8N122 1335 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 GJB1P08034 283 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 HOXC6P09630 235 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 WTAPQ15007 396 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 MTFR1Q15390 333 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 TKFCQ3LXA3 575 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 ASPRV1Q53RT3 343 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 SYDE2Q5VT97 1194 aa22.65■■□□□ 1.22
UPF1-212ENST00000601689 RBBP6Q7Z6E9 1792 aaKnown RBP22.65■■□□□ 1.22
UPF1-212ENST00000601689 HTTP42858 3142 aa22.64■■□□□ 1.22
UPF1-212ENST00000601689 PARP1P09874 1014 aaKnown RBP22.64■■□□□ 1.21
UPF1-212ENST00000601689 MCM5P33992 734 aa22.64■■□□□ 1.21
UPF1-212ENST00000601689 ZNF543Q08ER8 600 aa22.64■■□□□ 1.21
UPF1-212ENST00000601689 CREB3L3Q68CJ9 461 aa22.64■■□□□ 1.21
UPF1-212ENST00000601689 BTNL9Q6UXG8 535 aa22.64■■□□□ 1.21
UPF1-212ENST00000601689 TRIB2Q92519 343 aa22.64■■□□□ 1.21
UPF1-212ENST00000601689 MTA3Q9BTC8 594 aa22.64■■□□□ 1.21
UPF1-212ENST00000601689 SLC27A2O14975 620 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 EIF5BO60841 1220 aaKnown RBP22.63■■□□□ 1.21
UPF1-212ENST00000601689 KRT32Q14532 448 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 NECTIN1Q15223 517 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 CCDC174Q6PII3 467 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 ANKRD35Q8N283 1001 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 TMTC2Q8N394 836 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 ZNF236Q9UL36 1845 aa22.63■■□□□ 1.21
UPF1-212ENST00000601689 POTEFA5A3E0 1075 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 DHX16O60231 1041 aaKnown RBP22.62■■□□□ 1.21
UPF1-212ENST00000601689 SNHG28P0DPA3 235 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 TMEM67Q5HYA8 995 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 CYB5R4Q7L1T6 521 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 UNC93B1Q9H1C4 597 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 ACAD9Q9H845 621 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 CCPG1Q9ULG6 757 aa22.62■■□□□ 1.21
UPF1-212ENST00000601689 DIS3Q9Y2L1 958 aaKnown RBP22.62■■□□□ 1.21
UPF1-212ENST00000601689 TFRCP02786 760 aaKnown RBP22.61■■□□□ 1.21
UPF1-212ENST00000601689 ALAS1P13196 640 aa22.61■■□□□ 1.21
UPF1-212ENST00000601689 PRKAR2AP13861 404 aaKnown RBP22.61■■□□□ 1.21
UPF1-212ENST00000601689 SLC16A2P36021 539 aa22.61■■□□□ 1.21
UPF1-212ENST00000601689 GJA8P48165 433 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms