RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 TROAPQ12815 778 aa19.45■□□□□ 0.7
USHBP1-210ENST00000600286 CCAR1Q8IX12 1150 aaKnown RBP19.45■□□□□ 0.7
USHBP1-210ENST00000600286 SENP2Q9HC62 589 aa19.45■□□□□ 0.7
USHBP1-210ENST00000600286 RBM28Q9NW13 759 aaKnown RBP19.45■□□□□ 0.7
USHBP1-210ENST00000600286 PPP1R9AQ9ULJ8 1098 aa19.45■□□□□ 0.7
USHBP1-210ENST00000600286 KLRF2D3W0D1 207 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 TBC1D8O95759 1140 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 CRHR2Q13324 411 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 GRM4Q14833 912 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 NOM1Q5C9Z4 860 aaKnown RBP19.44■□□□□ 0.7
USHBP1-210ENST00000600286 APOA5Q6Q788 366 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 MICU3Q86XE3 530 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 FANCBQ8NB91 859 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 AGXT2Q9BYV1 514 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 CENPFP49454 3210 aa19.44■□□□□ 0.7
USHBP1-210ENST00000600286 GOLGA8AA7E2F4 631 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 GOLGA8BA8MQT2 603 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 GOLGA8HP0CJ92 632 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 METAP2P50579 478 aaKnown RBP eCLIP19.43■□□□□ 0.7
USHBP1-210ENST00000600286 CCNA1P78396 465 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 COL9A3Q14050 684 aaPredicted RBP19.43■□□□□ 0.7
USHBP1-210ENST00000600286 SYDE2Q5VT97 1194 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 LBX2Q6XYB7 198 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 ZNF274Q96GC6 653 aaPredicted RBP19.43■□□□□ 0.7
USHBP1-210ENST00000600286 PNMA2Q9UL42 364 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 RABGAP1Q9Y3P9 1069 aa19.43■□□□□ 0.7
USHBP1-210ENST00000600286 PALM3A6NDB9 673 aaPredicted RBP19.42■□□□□ 0.7
USHBP1-210ENST00000600286 KIF22Q14807 665 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 ARHGEF6Q15052 776 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 RTN1Q16799 776 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 CPLX2Q6PUV4 134 aaKnown RBP19.42■□□□□ 0.7
USHBP1-210ENST00000600286 BTNL9Q6UXG8 535 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 GPRC5AQ8NFJ5 357 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 PAGR1Q9BTK6 254 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 MYL10Q9BUA6 226 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 CWC22Q9HCG8 908 aaKnown RBP19.42■□□□□ 0.7
USHBP1-210ENST00000600286 FBXO28Q9NVF7 368 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 MAD2L2Q9UI95 211 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 BRPF3Q9ULD4 1205 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 MYH4Q9Y623 1939 aa19.42■□□□□ 0.7
USHBP1-210ENST00000600286 SPDYE16A6NNV3 312 aaPredicted RBP19.41■□□□□ 0.7
USHBP1-210ENST00000600286 AK2P54819 239 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 TRAF1Q13077 416 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 TOB2Q14106 344 aaPredicted RBP19.41■□□□□ 0.7
USHBP1-210ENST00000600286 PLS1Q14651 629 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 TTBK2Q6IQ55 1244 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 CCDC144CPQ8IYA2 1237 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 ANKRD13CQ8N6S4 541 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 ATG4CQ96DT6 458 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 UBA5Q9GZZ9 404 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 R3HDMLQ9H3Y0 253 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 CPA4Q9UI42 421 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 PRR12Q9ULL5 1215 aa19.41■□□□□ 0.7
USHBP1-210ENST00000600286 CCDC85CA6NKD9 419 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 VWA5AO00534 786 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 SMARCA1P28370 1054 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 SLC16A2P36021 539 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 MCM2P49736 904 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 EVCP57679 992 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 FAM110CQ1W6H9 321 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 C17orf99Q6UX52 265 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 KIF2CQ99661 725 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 SLKQ9H2G2 1235 aaPredicted RBP19.4■□□□□ 0.7
USHBP1-210ENST00000600286 VAT1LQ9HCJ6 419 aa19.4■□□□□ 0.7
USHBP1-210ENST00000600286 LOC285556D6RIA3 1793 aa19.39■□□□□ 0.7
USHBP1-210ENST00000600286 CPLX1O14810 134 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 RXRAP19793 462 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 PDIA3P30101 505 aaKnown RBP19.39■□□□□ 0.69
USHBP1-210ENST00000600286 COPB2P35606 906 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 SP3Q02447 781 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 RAB11FIP4Q86YS3 637 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 STAG2Q8N3U4 1231 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 ZNF296Q8WUU4 475 aaPredicted RBP19.39■□□□□ 0.69
USHBP1-210ENST00000600286 ZSCAN31Q96LW9 406 aaPredicted RBP19.39■□□□□ 0.69
USHBP1-210ENST00000600286 RBPJLQ9UBG7 517 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 MORF4L1Q9UBU8 362 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 ADAMTS5Q9UNA0 930 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 LIMCH1Q9UPQ0 1083 aa19.39■□□□□ 0.69
USHBP1-210ENST00000600286 BRCA2P51587 3418 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 GPR25O00155 361 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 FKTNO75072 461 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 PTPRFP10586 1907 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 OAZ1P54368 228 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 ERVK-9P63128 1117 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 ERVK-24P63145 666 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 AKAP17AQ02040 695 aaKnown RBP19.38■□□□□ 0.69
USHBP1-210ENST00000600286 NOL8Q76FK4 1167 aaKnown RBP19.38■□□□□ 0.69
USHBP1-210ENST00000600286 CTU1Q7Z7A3 348 aaKnown RBP19.38■□□□□ 0.69
USHBP1-210ENST00000600286 ADGRF4Q8IZF3 695 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 SLC38A10Q9HBR0 1119 aa19.38■□□□□ 0.69
USHBP1-210ENST00000600286 SEC63Q9UGP8 760 aaKnown RBP19.38■□□□□ 0.69
USHBP1-210ENST00000600286 SLC25A27O95847 323 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 STAT3P40763 770 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 SLC4A3P48751 1232 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 STK3Q13188 491 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 RASGRP2Q7LDG7 609 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 CPXCR1Q8N123 301 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 RRP36Q96EU6 259 aaKnown RBP19.37■□□□□ 0.69
USHBP1-210ENST00000600286 ERO1AQ96HE7 468 aa19.37■□□□□ 0.69
USHBP1-210ENST00000600286 LARP6Q9BRS8 491 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms