RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 CPXCR1Q8N123 301 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 ANKLE1Q8NAG6 615 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 HELLSQ9NRZ9 838 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 DDX20Q9UHI6 824 aaKnown RBP12.68□□□□□ -0.38
VRK3-214ENST00000598553 MTMR7Q9Y216 660 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 ZNF536O15090 1300 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 NEDD4P46934 1319 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 CCDC171Q6TFL3 1326 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 MYH6P13533 1939 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 EVI5O60447 810 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 TTLL1O95922 423 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 FGRP09769 529 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 GSPT1P15170 499 aaKnown RBP12.67□□□□□ -0.38
VRK3-214ENST00000598553 SDSP20132 328 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 SLC4A3P48751 1232 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 LRRFIP1Q32MZ4 808 aaKnown RBP12.67□□□□□ -0.38
VRK3-214ENST00000598553 ZNF792Q3KQV3 632 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 MCMDC2Q4G0Z9 681 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 OLFML2BQ68BL8 750 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 SNRNP48Q6IEG0 339 aaKnown RBP12.67□□□□□ -0.38
VRK3-214ENST00000598553 KCTD1Q719H9 257 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 TRMT44Q8IYL2 757 aaKnown RBP12.67□□□□□ -0.38
VRK3-214ENST00000598553 GMCL1P1Q8NEA9 526 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 KIFC2Q96AC6 838 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 MMP19Q99542 508 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 NACAP1Q9BZK3 213 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 RWDD1Q9H446 243 aaPredicted RBP12.67□□□□□ -0.38
VRK3-214ENST00000598553 OSBPL3Q9H4L5 887 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 MROH8Q9H579 483 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 ANAPC4Q9UJX5 808 aa12.67□□□□□ -0.38
VRK3-214ENST00000598553 SOX1O00570 391 aaPredicted RBP12.66□□□□□ -0.38
VRK3-214ENST00000598553 ADCY6O43306 1168 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 CAPN2P17655 700 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 PTGS1P23219 599 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 MCCP23508 829 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 PDE4BQ07343 736 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 ALX1Q15699 326 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 RRP12Q5JTH9 1297 aaKnown RBP12.66□□□□□ -0.38
VRK3-214ENST00000598553 GJC2Q5T442 439 aaPredicted RBP12.66□□□□□ -0.38
VRK3-214ENST00000598553 TTBK2Q6IQ55 1244 aa12.66□□□□□ -0.38
VRK3-214ENST00000598553 ZBTB47Q9UFB7 747 aaPredicted RBP12.66□□□□□ -0.38
VRK3-214ENST00000598553 DNAJC25-GNG10A0A024R161 153 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 TSPY2A6NKD2 308 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 TMEM232C9JQI7 657 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 STRNO43815 780 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 ORC4O43929 436 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 RANBP6O60518 1105 aaKnown RBP12.65□□□□□ -0.38
VRK3-214ENST00000598553 FCER1AP12319 257 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 BMP3P12645 472 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 NOVP48745 357 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 RCSD1Q6JBY9 416 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 CWC27Q6UX04 472 aaKnown RBP12.65□□□□□ -0.38
VRK3-214ENST00000598553 SKAP1Q86WV1 359 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 ABRAQ8N0Z2 381 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 PURBQ96QR8 312 aaKnown RBP12.65□□□□□ -0.38
VRK3-214ENST00000598553 SLC38A10Q9HBR0 1119 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 STX8Q9UNK0 236 aa12.65□□□□□ -0.38
VRK3-214ENST00000598553 ASTN1O14525 1302 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 FRMPD2Q68DX3 1309 aaPredicted RBP12.64□□□□□ -0.39
VRK3-214ENST00000598553 SLC25A27O95847 323 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 SNAI1O95863 264 aaPredicted RBP12.64□□□□□ -0.39
VRK3-214ENST00000598553 ZNF865P0CJ78 1059 aaPredicted RBP12.64□□□□□ -0.39
VRK3-214ENST00000598553 ATN1P54259 1190 aaPredicted RBP12.64□□□□□ -0.39
VRK3-214ENST00000598553 AAMPQ13685 434 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 PRPF38AQ8NAV1 312 aaKnown RBP12.64□□□□□ -0.39
VRK3-214ENST00000598553 AGBL1Q96MI9 1066 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 ZKSCAN3Q9BRR0 538 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 TEX13BQ9BXU2 312 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 HOMER2Q9NSB8 354 aa12.64□□□□□ -0.39
VRK3-214ENST00000598553 ZMYM6O95789 1325 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 MYADML2A6NDP7 307 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 ATP2A1O14983 1001 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 SEPT4O43236 478 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 SLC16A2P36021 539 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 MUM1L1Q5H9M0 696 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 GDF15Q99988 308 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 TMEM47Q9BQJ4 181 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 TINF2Q9BSI4 451 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 SENP6Q9GZR1 1112 aaPredicted RBP12.63□□□□□ -0.39
VRK3-214ENST00000598553 CPVLQ9H3G5 476 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 TOMM22Q9NS69 142 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 FEM1BQ9UK73 627 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 ISY1Q9ULR0 285 aaKnown RBP12.63□□□□□ -0.39
VRK3-214ENST00000598553 NR2E3Q9Y5X4 410 aa12.63□□□□□ -0.39
VRK3-214ENST00000598553 PGK1P00558 417 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
VRK3-214ENST00000598553 SLC3A2P08195 630 aaKnown RBP12.62□□□□□ -0.39
VRK3-214ENST00000598553 SLC1A4P43007 532 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 MAGEA10P43363 369 aaPredicted RBP12.62□□□□□ -0.39
VRK3-214ENST00000598553 CNTN2Q02246 1040 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 KCTD2Q14681 263 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 TMEM63BQ5T3F8 832 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 CCDC174Q6PII3 467 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 LRCH3Q96II8 777 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 GMCL1Q96IK5 515 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 ZNF287Q9HBT7 754 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 PRR12Q9ULL5 1215 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 TAF6LQ9Y6J9 622 aa12.62□□□□□ -0.39
VRK3-214ENST00000598553 DNM1LO00429 736 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 ZBED4O75132 1171 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms