RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 CATIPQ7Z7H3 387 aa23.76■■□□□ 1.39
PNKP-211ENST00000598020 KIFC2Q96AC6 838 aa23.76■■□□□ 1.39
PNKP-211ENST00000598020 CHMP4CQ96CF2 233 aa23.76■■□□□ 1.39
PNKP-211ENST00000598020 LRRC2Q9BYS8 371 aa23.76■■□□□ 1.39
PNKP-211ENST00000598020 ARHGAP39Q9C0H5 1083 aa23.76■■□□□ 1.39
PNKP-211ENST00000598020 SPATC1LQ9H0A9 340 aa23.76■■□□□ 1.39
PNKP-211ENST00000598020 ZBED4O75132 1171 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 DDAH1O94760 285 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 PARP1P09874 1014 aaKnown RBP23.75■■□□□ 1.39
PNKP-211ENST00000598020 CASTP20810 708 aaKnown RBP23.75■■□□□ 1.39
PNKP-211ENST00000598020 OAZ1P54368 228 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 RUFY3Q7L099 469 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 SHCBP1Q8NEM2 672 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 TRIM47Q96LD4 638 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 AGXT2Q9BYV1 514 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 EFCC1Q9HA90 598 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 GPCPD1Q9NPB8 672 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 ZNF214Q9UL59 606 aaPredicted RBP23.75■■□□□ 1.39
PNKP-211ENST00000598020 PRR12Q9ULL5 1215 aa23.75■■□□□ 1.39
PNKP-211ENST00000598020 ISY1Q9ULR0 285 aaKnown RBP23.75■■□□□ 1.39
PNKP-211ENST00000598020 FRMPD2Q68DX3 1309 aaPredicted RBP23.75■■□□□ 1.39
PNKP-211ENST00000598020 DOCK3Q8IZD9 2030 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 PALM3A6NDB9 673 aaPredicted RBP23.74■■□□□ 1.39
PNKP-211ENST00000598020 CPA1P15085 419 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 MAPK4P31152 587 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 IKQ13123 557 aaPredicted RBP23.74■■□□□ 1.39
PNKP-211ENST00000598020 GRM4Q14833 912 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 SYDE2Q5VT97 1194 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 SAMD1Q6SPF0 538 aaPredicted RBP23.74■■□□□ 1.39
PNKP-211ENST00000598020 OTOP1Q7RTM1 612 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 ZNF654Q8IZM8 581 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 TCEANC2Q96MN5 208 aa23.74■■□□□ 1.39
PNKP-211ENST00000598020 CCDC69A6NI79 296 aa23.73■■□□□ 1.39
PNKP-211ENST00000598020 NFXL1Q6ZNB6 911 aa23.73■■□□□ 1.39
PNKP-211ENST00000598020 MOV10L1Q9BXT6 1211 aaKnown RBP23.73■■□□□ 1.39
PNKP-211ENST00000598020 PORCNQ9H237 461 aa23.73■■□□□ 1.39
PNKP-211ENST00000598020 MAD2L2Q9UI95 211 aa23.73■■□□□ 1.39
PNKP-211ENST00000598020 CYP46A1Q9Y6A2 500 aa23.73■■□□□ 1.39
PNKP-211ENST00000598020 ZSWIM8A7E2V4 1837 aa23.73■■□□□ 1.39
PNKP-211ENST00000598020 FMNL1O95466 1100 aaPredicted RBP23.72■■□□□ 1.39
PNKP-211ENST00000598020 SLC25A27O95847 323 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 GOLGA8HP0CJ92 632 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 CALM1P0DP23 149 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 CALM2P0DP24 149 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 CALM3P0DP25 149 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 HOXD10P28358 340 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 COPB2P35606 906 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 SLC16A2P36021 539 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 STAT3P40763 770 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 PRMT2P55345 433 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 PKN2Q16513 984 aaKnown RBP23.72■■□□□ 1.39
PNKP-211ENST00000598020 RIOX2Q8IUF8 465 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 TEX13BQ9BXU2 312 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 RANBP17Q9H2T7 1088 aaKnown RBP23.72■■□□□ 1.39
PNKP-211ENST00000598020 TRIM17Q9Y577 477 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 SLC12A7Q9Y666 1083 aa23.72■■□□□ 1.39
PNKP-211ENST00000598020 TNPO2O14787 897 aaKnown RBP23.71■■□□□ 1.39
PNKP-211ENST00000598020 Q6ZUG5 572 aa23.71■■□□□ 1.39
PNKP-211ENST00000598020 MROH8Q9H579 483 aa23.71■■□□□ 1.39
PNKP-211ENST00000598020 CTDP1Q9Y5B0 961 aaPredicted RBP23.71■■□□□ 1.39
PNKP-211ENST00000598020 ZNF536O15090 1300 aa23.7■■□□□ 1.38
PNKP-211ENST00000598020 RCAN1P53805 252 aa23.7■■□□□ 1.38
PNKP-211ENST00000598020 CCAR1Q8IX12 1150 aaKnown RBP23.7■■□□□ 1.38
PNKP-211ENST00000598020 STAG2Q8N3U4 1231 aa23.7■■□□□ 1.38
PNKP-211ENST00000598020 COA7Q96BR5 231 aa23.7■■□□□ 1.38
PNKP-211ENST00000598020 SRRDQ9UH36 339 aa23.7■■□□□ 1.38
PNKP-211ENST00000598020 KLRF2D3W0D1 207 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 ERCC3P19447 782 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 KIF5BP33176 963 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 EVCP57679 992 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 FGD1P98174 961 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 PLS1Q14651 629 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 COL13A1Q5TAT6 717 aaPredicted RBP23.69■■□□□ 1.38
PNKP-211ENST00000598020 APOA5Q6Q788 366 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 SYNE3Q6ZMZ3 975 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 GPR142Q7Z601 462 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 PLEKHH3Q7Z736 793 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 NUP133Q8WUM0 1156 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 UBA5Q9GZZ9 404 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 GJD2Q9UKL4 321 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 PNMA2Q9UL42 364 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 BRPF3Q9ULD4 1205 aa23.69■■□□□ 1.38
PNKP-211ENST00000598020 SMARCA1P28370 1054 aa23.68■■□□□ 1.38
PNKP-211ENST00000598020 RBM25P49756 843 aaKnown RBP23.68■■□□□ 1.38
PNKP-211ENST00000598020 SNRNP48Q6IEG0 339 aaKnown RBP23.68■■□□□ 1.38
PNKP-211ENST00000598020 CTCFLQ8NI51 663 aaPredicted RBP23.68■■□□□ 1.38
PNKP-211ENST00000598020 MYL10Q9BUA6 226 aa23.68■■□□□ 1.38
PNKP-211ENST00000598020 UPF3BQ9BZI7 483 aaKnown RBP23.68■■□□□ 1.38
PNKP-211ENST00000598020 ALDH8A1Q9H2A2 487 aaPredicted RBP23.68■■□□□ 1.38
PNKP-211ENST00000598020 RAVER2Q9HCJ3 691 aaKnown RBP23.68■■□□□ 1.38
PNKP-211ENST00000598020 PTPN22Q9Y2R2 807 aa23.68■■□□□ 1.38
PNKP-211ENST00000598020 STRNO43815 780 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 ICAM1P05362 532 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 GNAQP50148 359 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 TKFCQ3LXA3 575 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.67■■□□□ 1.38
PNKP-211ENST00000598020 ADGRF4Q8IZF3 695 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 CPXCR1Q8N123 301 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 FANCBQ8NB91 859 aa23.67■■□□□ 1.38
PNKP-211ENST00000598020 BRF1Q92994 677 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms