RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	ISY1	Q9ULR0	285 aa	Known RBP	10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	MTMR7	Q9Y216	660 aa		10.83	□□□□□ -0.68
DNMT1-223	ENST00000591239	SPDYE4	A6NLX3	237 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZBED4	O75132	1171 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	ADORA2A	P29274	412 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	STAT3	P40763	770 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	C1QBP	Q07021	282 aa	Known RBP	10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	IK	Q13123	557 aa	Predicted RBP	10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	CCL14	Q16627	93 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	ERICH6B	Q5W0A0	696 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	KIAA1211	Q6ZU35	1233 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	KCTD1	Q719H9	257 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	FAM160B2	Q86V87	743 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	IQCA1	Q86XH1	822 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	RIOX2	Q8IUF8	465 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	TRMT44	Q8IYL2	757 aa	Known RBP	10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	CHURC1	Q8WUH1	139 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	TRIB2	Q92519	343 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	MAP4K1	Q92918	833 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	APBA2	Q99767	749 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	ESYT1	Q9BSJ8	1104 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	KRT23	Q9C075	422 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	UNC93B1	Q9H1C4	597 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	SLC38A10	Q9HBR0	1119 aa		10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.82	□□□□□ -0.68
DNMT1-223	ENST00000591239	COL11A1	P12107	1806 aa	Predicted RBP	10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	RBBP6	Q7Z6E9	1792 aa	Known RBP	10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	ATP2A1	O14983	1001 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	PLA2G6	O60733	806 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	GJB1	P08034	283 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	CYP21A2	P08686	494 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	HOXC6	P09630	235 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	FDX1	P10109	184 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	FCER1A	P12319	257 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZKSCAN1	P17029	563 aa	Predicted RBP	10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	TRIM32	Q13049	653 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	CCDC96	Q2M329	555 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	CCDC178	Q5BJE1	867 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	RASGRP2	Q7LDG7	609 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	DPP9	Q86TI2	863 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	DGKH	Q86XP1	1220 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	ABRA	Q8N0Z2	381 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	CPXCR1	Q8N123	301 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	DCAF4	Q8WV16	495 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	TEX13B	Q9BXU2	312 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	LSG1	Q9H089	658 aa	Known RBP	10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	PPP4R2	Q9NY27	417 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	RBM8A	Q9Y5S9	174 aa	Known RBP	10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239	DNAH12	Q6ZR08	3092 aa		10.81	□□□□□ -0.68
DNMT1-223	ENST00000591239		E7EWF7	191 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	PDHB	P11177	359 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	COPB2	P35606	906 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	GJA8	P48165	433 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	OAZ1	P54368	228 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	TRDN	Q13061	729 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	MAP3K21	Q5TCX8	1036 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	SNRNP48	Q6IEG0	339 aa	Known RBP	10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	ENAH	Q8N8S7	591 aa	Predicted RBP	10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	NPLOC4	Q8TAT6	608 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	ANKS1A	Q92625	1134 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	UBAC1	Q9BSL1	405 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	RAVER2	Q9HCJ3	691 aa	Known RBP	10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	HMX1	Q9NP08	348 aa	Predicted RBP	10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	PAK6	Q9NQU5	681 aa	Predicted RBP	10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	FLRT1	Q9NZU1	646 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	RIPK3	Q9Y572	518 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	TAF6L	Q9Y6J9	622 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	RPTOR	Q8N122	1335 aa		10.8	□□□□□ -0.68
DNMT1-223	ENST00000591239	COBL	O75128	1261 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	CDC45	O75419	566 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	SNHG28	P0DPA3	235 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	PRKAR2A	P13861	404 aa	Known RBP	10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	SLC4A3	P48751	1232 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	CACNB2	Q08289	660 aa	Predicted RBP	10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	MFSD14C	Q5VZR4	134 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	TTBK2	Q6IQ55	1244 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	CASC1	Q6TDU7	716 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	BTNL9	Q6UXG8	535 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	CYB5R4	Q7L1T6	521 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	PNMA1	Q8ND90	353 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	U2AF1L4	Q8WU68	220 aa	Known RBP	10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	DEFB118	Q96PH6	123 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	MMP19	Q99542	508 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	KAT14	Q9H8E8	782 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	GPCPD1	Q9NPB8	672 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	ANO2	Q9NQ90	1003 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	SLC5A4	Q9NY91	659 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	PRR12	Q9ULL5	1215 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	TNKS	O95271	1327 aa		10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.79	□□□□□ -0.68
DNMT1-223	ENST00000591239	SGPL1	O95470	568 aa		10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	PGK2	P07205	417 aa		10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	SLC16A2	P36021	539 aa		10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	SNAP25	P60880	206 aa		10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	ZNF543	Q08ER8	600 aa		10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	MKRN4P	Q13434	485 aa	Predicted RBP	10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	KCTD2	Q14681	263 aa		10.78	□□□□□ -0.68
DNMT1-223	ENST00000591239	IFIT1B	Q5T764	474 aa	Known RBP	10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms