RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 MMP19Q99542 508 aa12.46□□□□□ -0.41
RETREG3-209ENST00000590035 SLF1Q9BQI6 1058 aa12.46□□□□□ -0.41
RETREG3-209ENST00000590035 RIPK3Q9Y572 518 aa12.46□□□□□ -0.41
RETREG3-209ENST00000590035 VCANP13611 3396 aa12.46□□□□□ -0.42
RETREG3-209ENST00000590035 ADAMTS4O75173 837 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 GNAT2P19087 354 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 ANO1Q5XXA6 986 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 MSL3Q8N5Y2 521 aaKnown RBP12.45□□□□□ -0.42
RETREG3-209ENST00000590035 OTUD7AQ8TE49 926 aaPredicted RBP12.45□□□□□ -0.42
RETREG3-209ENST00000590035 NUP88Q99567 741 aaPredicted RBP12.45□□□□□ -0.42
RETREG3-209ENST00000590035 TEX13BQ9BXU2 312 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 PDLIM7Q9NR12 457 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 MTMR4Q9NYA4 1195 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 STXBP5LQ9Y2K9 1186 aa12.45□□□□□ -0.42
RETREG3-209ENST00000590035 SYNGAP1Q96PV0 1343 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 PATL2C9JE40 543 aaKnown RBP12.44□□□□□ -0.42
RETREG3-209ENST00000590035 KBTBD13C9JR72 458 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 SNAI1O95863 264 aaPredicted RBP12.44□□□□□ -0.42
RETREG3-209ENST00000590035 NOVP48745 357 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 TRIM60Q495X7 471 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 ZMYM1Q5SVZ6 1142 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 CCSAPQ6IQ19 270 aaPredicted RBP12.44□□□□□ -0.42
RETREG3-209ENST00000590035 IFNL3Q8IZI9 196 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 GMCL1P1Q8NEA9 526 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 NEDD1Q8NHV4 660 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 CEP95Q96GE4 821 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 SLC38A10Q9HBR0 1119 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.44□□□□□ -0.42
RETREG3-209ENST00000590035 CHD9Q3L8U1 2897 aa12.44□□□□□ -0.42
RETREG3-209ENST00000590035 PRUNE2Q8WUY3 3088 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 TRIM43BA6NCK2 446 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 MINDY4BA8MYZ0 360 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 ITGB8P26012 769 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 ADCYAP1R1P41586 468 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 KCTD2Q14681 263 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 SNRNP48Q6IEG0 339 aaKnown RBP12.43□□□□□ -0.42
RETREG3-209ENST00000590035 SH3RF1Q7Z6J0 888 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 ZNF467Q7Z7K2 595 aaPredicted RBP12.43□□□□□ -0.42
RETREG3-209ENST00000590035 PRPF38AQ8NAV1 312 aaKnown RBP12.43□□□□□ -0.42
RETREG3-209ENST00000590035 KLHDC9Q8NEP7 349 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 TRIM43Q96BQ3 446 aaPredicted RBP12.43□□□□□ -0.42
RETREG3-209ENST00000590035 GPATCH3Q96I76 525 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 SEC62Q99442 399 aaKnown RBP12.43□□□□□ -0.42
RETREG3-209ENST00000590035 KATNBL1Q9H079 304 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 MKNK2Q9HBH9 465 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 XPNPEP3Q9NQH7 507 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 TACC3Q9Y6A5 838 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 MCM3APO60318 1980 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 TTC28Q96AY4 2481 aa12.43□□□□□ -0.42
RETREG3-209ENST00000590035 PRDM1O75626 825 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 RARBP10826 455 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 AKR1A1P14550 325 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 OAZ1P54368 228 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 NKX3-2P78367 333 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 GUCD1Q96NT3 240 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 TSEN34Q9BSV6 310 aaKnown RBP12.42□□□□□ -0.42
RETREG3-209ENST00000590035 CLIP2Q9UDT6 1046 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 ATP11BQ9Y2G3 1177 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 LRRC37A2A6NM11 1700 aa12.42□□□□□ -0.42
RETREG3-209ENST00000590035 ZNF536O15090 1300 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 SYNRGQ9UMZ2 1314 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 LCTP09848 1927 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 A0A1W2PQ45 241 aaPredicted RBP12.41□□□□□ -0.42
RETREG3-209ENST00000590035 A0A1W2PQY0 241 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 PITPNM1O00562 1244 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 KIAA0355O15063 1070 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 ADCY6O43306 1168 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 PLA2G6O60733 806 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 TTLL1O95922 423 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 PGK1P00558 417 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 FGRP09769 529 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 CST5P28325 142 aaPredicted RBP12.41□□□□□ -0.42
RETREG3-209ENST00000590035 TDO2P48775 406 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 TLE2Q04725 743 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 C9orf50Q5SZB4 431 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 ANKRD33Q7Z3H0 272 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 SPDYE1Q8NFV5 336 aaPredicted RBP12.41□□□□□ -0.42
RETREG3-209ENST00000590035 LENG1Q96BZ8 264 aaPredicted RBP12.41□□□□□ -0.42
RETREG3-209ENST00000590035 UPF3AQ9H1J1 476 aaKnown RBP12.41□□□□□ -0.42
RETREG3-209ENST00000590035 ZNF287Q9HBT7 754 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 FEM1BQ9UK73 627 aa12.41□□□□□ -0.42
RETREG3-209ENST00000590035 ERC2O15083 957 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 CTAGE5O15320 804 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 PPARAQ07869 468 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 SHHQ15465 462 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 RNF180Q86T96 592 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 STK11IPQ8N1F8 1099 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 LRRC47Q8N1G4 583 aaKnown RBP12.4□□□□□ -0.42
RETREG3-209ENST00000590035 SLC17A8Q8NDX2 589 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 CHST13Q8NET6 341 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 BADQ92934 168 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 FERMT2Q96AC1 680 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 GMCL1Q96IK5 515 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 TOX2Q96NM4 488 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 LBHD1Q9BQE6 289 aaPredicted RBP12.4□□□□□ -0.42
RETREG3-209ENST00000590035 IL17RBQ9NRM6 502 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 ANAPC4Q9UJX5 808 aa12.4□□□□□ -0.42
RETREG3-209ENST00000590035 MYADML2A6NDP7 307 aa12.39□□□□□ -0.43
RETREG3-209ENST00000590035 MOXD2PA6NHM9 499 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms