RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 TDRD3Q9H7E2 651 aaKnown RBP10.06□□□□□ -0.8
SMAD4-206ENST00000588860 CABP5Q9NP86 173 aa10.06□□□□□ -0.8
SMAD4-206ENST00000588860 MTMR4Q9NYA4 1195 aa10.06□□□□□ -0.8
SMAD4-206ENST00000588860 FAM198AQ9UFP1 575 aa10.06□□□□□ -0.8
SMAD4-206ENST00000588860 NOL7Q9UMY1 257 aaKnown RBP10.06□□□□□ -0.8
SMAD4-206ENST00000588860 CEP131Q9UPN4 1083 aa10.06□□□□□ -0.8
SMAD4-206ENST00000588860 DICER1Q9UPY3 1922 aaKnown RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 COL2A1P02458 1487 aaPredicted RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 DDTLA6NHG4 134 aaPredicted RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 USP17L5A8MUK1 530 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 KLRF2D3W0D1 207 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 PFKFB1P16118 471 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 CALML3P27482 149 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 NOVP48745 357 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 PSEN1P49768 467 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 EIF6P56537 245 aaKnown RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 MLLT1Q03111 559 aaPredicted RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 SLC35G1Q2M3R5 365 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 UVSSAQ2YD98 709 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 DALRD3Q5D0E6 543 aaKnown RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 USP17L2Q6R6M4 530 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 HEATR3Q7Z4Q2 680 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 CLEC10AQ8IUN9 316 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 KRI1Q8N9T8 703 aaKnown RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 TNFRSF25Q93038 417 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 CLIC6Q96NY7 704 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 PPP1R9BQ96SB3 815 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 VPS33BQ9H267 617 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 SH3GLB2Q9NR46 395 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 TMOD2Q9NZR1 351 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 CLIP2Q9UDT6 1046 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 HDAC9Q9UKV0 1011 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 PCDHB6Q9Y5E3 794 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 MRVI1Q9Y6F6 885 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 MYH7BA7E2Y1 1941 aa10.05□□□□□ -0.8
SMAD4-206ENST00000588860 FRMPD2Q68DX3 1309 aaPredicted RBP10.05□□□□□ -0.8
SMAD4-206ENST00000588860 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.04□□□□□ -0.8
SMAD4-206ENST00000588860 TRIM75PA6NK02 468 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 FAM196BA6NMK8 535 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 STXBP3O00186 592 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 ENTPD3O75355 529 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 TTLL1O95922 423 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 VIL1P09327 827 aaKnown RBP10.04□□□□□ -0.8
SMAD4-206ENST00000588860 VEGFAP15692 232 aaPredicted RBP10.04□□□□□ -0.8
SMAD4-206ENST00000588860 ATP2B2Q01814 1243 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 NPY5RQ15761 445 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 ANO6Q4KMQ2 910 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 ASPRV1Q53RT3 343 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 EARS2Q5JPH6 523 aaKnown RBP10.04□□□□□ -0.8
SMAD4-206ENST00000588860 PPP4R3BQ5MIZ7 849 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 RESP18Q5W5W9 173 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 WWC2Q6AWC2 1192 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 SHC4Q6S5L8 630 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 SH3BP5LQ7L8J4 393 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 CCDC148Q8NFR7 591 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 RRP36Q96EU6 259 aaKnown RBP10.04□□□□□ -0.8
SMAD4-206ENST00000588860 PRMT6Q96LA8 375 aaPredicted RBP10.04□□□□□ -0.8
SMAD4-206ENST00000588860 CCDC17Q96LX7 622 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 SPZ1Q9BXG8 430 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 CPVLQ9H3G5 476 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 DNAJC18Q9H819 358 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 PI4KBQ9UBF8 816 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 ZNRF3Q9ULT6 936 aa10.04□□□□□ -0.8
SMAD4-206ENST00000588860 CYTH3O43739 400 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 ZNF202O95125 648 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 SLURP2P0DP57 97 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 PDHBP11177 359 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 SYKP43405 635 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 DLGAP5Q15398 846 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 STX1AQ16623 288 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 CCDC96Q2M329 555 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 CERKLQ49MI3 558 aaPredicted RBP10.03□□□□□ -0.8
SMAD4-206ENST00000588860 NOM1Q5C9Z4 860 aaKnown RBP10.03□□□□□ -0.8
SMAD4-206ENST00000588860 TTC38Q5R3I4 469 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 PIK3AP1Q6ZUJ8 805 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 BLIDQ8IZY5 108 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 GMLQ99445 158 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 SDF4Q9BRK5 362 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 TAOK3Q9H2K8 898 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 GPCPD1Q9NPB8 672 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.03□□□□□ -0.8
SMAD4-206ENST00000588860 SEC63Q9UGP8 760 aaKnown RBP10.03□□□□□ -0.8
SMAD4-206ENST00000588860 FBXO2Q9UK22 296 aaPredicted RBP10.03□□□□□ -0.8
SMAD4-206ENST00000588860 PCDHA4Q9UN74 947 aa10.03□□□□□ -0.8
SMAD4-206ENST00000588860 ATRNL1Q5VV63 1379 aa10.02□□□□□ -0.8
SMAD4-206ENST00000588860 CLRN2A0PK11 232 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 TCP10L2B9ZVM9 353 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 ADAMTS3O15072 1205 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 BMP15O95972 392 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 PTPREP23469 700 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 SMARCA1P28370 1054 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 NAPAP54920 295 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 PDAP1Q13442 181 aaKnown RBP10.02□□□□□ -0.81
SMAD4-206ENST00000588860 ZNF174Q15697 407 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 HOMER1Q86YM7 354 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 FOXP4Q8IVH2 680 aaPredicted RBP10.02□□□□□ -0.81
SMAD4-206ENST00000588860 OGFOD1Q8N543 542 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 DAGLBQ8NCG7 672 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 SMC1BQ8NDV3 1235 aa10.02□□□□□ -0.81
SMAD4-206ENST00000588860 FAM200AQ8TCP9 573 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms