RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 RPS6KC1Q96S38 1066 aa10.11□□□□□ -0.79
VMP1-208ENST00000588617 TTC1Q99614 292 aa10.11□□□□□ -0.79
VMP1-208ENST00000588617 TMPRSS13Q9BYE2 586 aa10.11□□□□□ -0.79
VMP1-208ENST00000588617 AASDHPPTQ9NRN7 309 aa10.11□□□□□ -0.79
VMP1-208ENST00000588617 LRRC4BQ9NT99 713 aa10.11□□□□□ -0.79
VMP1-208ENST00000588617 SHOXO15266 292 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 PLIN1O60240 522 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 DEAF1O75398 565 aaPredicted RBP10.1□□□□□ -0.79
VMP1-208ENST00000588617 RNF4P78317 190 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 TMPRSS15P98073 1019 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 GTF2IRD2BQ6EKJ0 949 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 GTF2IRD2Q86UP8 949 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 DCAF11Q8TEB1 546 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 PPP1R13LQ8WUF5 828 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 SPOCK3Q9BQ16 436 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 YIPF4Q9BSR8 244 aa10.1□□□□□ -0.79
VMP1-208ENST00000588617 PUS7LQ9H0K6 701 aaKnown RBP10.1□□□□□ -0.79
VMP1-208ENST00000588617 CGGBP1Q9UFW8 167 aaPredicted RBP10.1□□□□□ -0.79
VMP1-208ENST00000588617 KRT18P05783 430 aaKnown RBP10.09□□□□□ -0.79
VMP1-208ENST00000588617 ADH5P11766 374 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 PPP2R5DQ14738 602 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 CDCA2Q69YH5 1023 aaPredicted RBP10.09□□□□□ -0.79
VMP1-208ENST00000588617 C1orf229Q6ZS94 237 aaPredicted RBP10.09□□□□□ -0.79
VMP1-208ENST00000588617 ZBTB46Q86UZ6 589 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 PASD1Q8IV76 773 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 PI4K2BQ8TCG2 481 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 EDARADDQ8WWZ3 215 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 CCDC140Q96MF4 163 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 KREMEN1Q96MU8 473 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 CYP4F12Q9HCS2 524 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 CEP131Q9UPN4 1083 aa10.09□□□□□ -0.79
VMP1-208ENST00000588617 A0A087WZG4 1122 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 DLL1O00548 723 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 EIF3JO75822 258 aaKnown RBP10.08□□□□□ -0.8
VMP1-208ENST00000588617 APPP05067 770 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 SNRPB2P08579 225 aaKnown RBP10.08□□□□□ -0.8
VMP1-208ENST00000588617 HOXC12P31275 282 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 GFRA1P56159 465 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 ZNF445P59923 1031 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 MAP4K2Q12851 820 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 UBE4AQ14139 1066 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 NTRK3Q16288 839 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 MAMDC2Q7Z304 686 aaPredicted RBP10.08□□□□□ -0.8
VMP1-208ENST00000588617 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.08□□□□□ -0.8
VMP1-208ENST00000588617 MFSD2AQ8NA29 543 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 OR2W6PQ8NHA6 318 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 HOOK2Q96ED9 719 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 IFT22Q9H7X7 185 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.08□□□□□ -0.8
VMP1-208ENST00000588617 PRDM6Q9NQX0 595 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 PCDHB12Q9Y5F1 795 aa10.08□□□□□ -0.8
VMP1-208ENST00000588617 TCRBV16S1A1N1A0A5B0 115 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 MEGF11A6BM72 1044 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 B4E1Z4 1266 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 LRIG2O94898 1065 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 ASPAP45381 313 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 SCNN1BP51168 640 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 KRT76Q01546 638 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 SOX4Q06945 474 aaPredicted RBP10.07□□□□□ -0.8
VMP1-208ENST00000588617 PIN1Q13526 163 aaPredicted RBP10.07□□□□□ -0.8
VMP1-208ENST00000588617 ILDR2Q71H61 639 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 ARMCX6Q7L4S7 300 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 CNTD1Q8N815 330 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 GALNT6Q8NCL4 622 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 COG1Q8WTW3 980 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 CHMP4CQ96CF2 233 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 BTBD6Q96KE9 485 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 TRIM8Q9BZR9 551 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 NOL6Q9H6R4 1146 aaKnown RBP10.07□□□□□ -0.8
VMP1-208ENST00000588617 TRHDEQ9UKU6 1024 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 DIS3Q9Y2L1 958 aaKnown RBP10.07□□□□□ -0.8
VMP1-208ENST00000588617 TRAF6Q9Y4K3 522 aa10.07□□□□□ -0.8
VMP1-208ENST00000588617 E2F8A0AVK6 867 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 FAM181BA6NEQ2 426 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 NEMP1O14524 444 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 ZEB2O60315 1214 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 CRTAMO95727 393 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 PYGMP11217 842 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 DRD2P14416 443 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 NID1P14543 1247 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 ECI1P42126 302 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 PIK3R6Q5UE93 754 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 USP53Q70EK8 1073 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 SMYD4Q8IYR2 804 aaPredicted RBP10.06□□□□□ -0.8
VMP1-208ENST00000588617 C12orf50Q8NA57 414 aaPredicted RBP10.06□□□□□ -0.8
VMP1-208ENST00000588617 TMEM145Q8NBT3 493 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 TTC8Q8TAM2 541 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 ACDQ96AP0 544 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 VWCEQ96DN2 955 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 WNK4Q96J92 1243 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 COL25A1Q9BXS0 654 aaPredicted RBP10.06□□□□□ -0.8
VMP1-208ENST00000588617 RNF208Q9H0X6 261 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 CDH19Q9H159 772 aa10.06□□□□□ -0.8
VMP1-208ENST00000588617 WISP1O95388 367 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 ID4P47928 161 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 RNFT1Q5M7Z0 435 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 TRAPPC3LQ5T215 181 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 PPP4R4Q6NUP7 873 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 DTWD1Q8N5C7 304 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 SMG8Q8ND04 991 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms