RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 TMEM232C9JQI7 657 aa33.23■■■□□ 2.91
LIG3-208ENST00000586407 PGK2P07205 417 aa33.23■■■□□ 2.91
LIG3-208ENST00000586407 FCER1AP12319 257 aa33.23■■■□□ 2.91
LIG3-208ENST00000586407 AKNAD1Q5T1N1 836 aa33.23■■■□□ 2.91
LIG3-208ENST00000586407 SNRNP48Q6IEG0 339 aaKnown RBP33.23■■■□□ 2.91
LIG3-208ENST00000586407 PAWRQ96IZ0 340 aaKnown RBP33.23■■■□□ 2.91
LIG3-208ENST00000586407 MMP19Q99542 508 aa33.23■■■□□ 2.91
LIG3-208ENST00000586407 RAVER2Q9HCJ3 691 aaKnown RBP33.23■■■□□ 2.91
LIG3-208ENST00000586407 RIPK3Q9Y572 518 aa33.23■■■□□ 2.91
LIG3-208ENST00000586407 KCTD1Q719H9 257 aa33.22■■■□□ 2.91
LIG3-208ENST00000586407 TRPV1Q8NER1 839 aa33.22■■■□□ 2.91
LIG3-208ENST00000586407 STAG1Q8WVM7 1258 aa33.22■■■□□ 2.91
LIG3-208ENST00000586407 SLC1A4P43007 532 aa33.21■■■□□ 2.91
LIG3-208ENST00000586407 MFSD6Q6ZSS7 791 aa33.21■■■□□ 2.91
LIG3-208ENST00000586407 GMCL1Q96IK5 515 aa33.21■■■□□ 2.91
LIG3-208ENST00000586407 TEX13BQ9BXU2 312 aa33.21■■■□□ 2.91
LIG3-208ENST00000586407 CEP290O15078 2479 aa33.21■■■□□ 2.91
LIG3-208ENST00000586407 ZBED4O75132 1171 aa33.2■■■□□ 2.91
LIG3-208ENST00000586407 IGHA2P01877 340 aa33.2■■■□□ 2.91
LIG3-208ENST00000586407 ABRAQ8N0Z2 381 aa33.2■■■□□ 2.91
LIG3-208ENST00000586407 DPF3Q92784 378 aa33.2■■■□□ 2.91
LIG3-208ENST00000586407 CTDP1Q9Y5B0 961 aaPredicted RBP33.2■■■□□ 2.91
LIG3-208ENST00000586407 MNX1P50219 401 aaPredicted RBP33.19■■■□□ 2.9
LIG3-208ENST00000586407 IKQ13123 557 aaPredicted RBP33.19■■■□□ 2.9
LIG3-208ENST00000586407 PPP4R3BQ5MIZ7 849 aa33.19■■■□□ 2.9
LIG3-208ENST00000586407 SLC38A10Q9HBR0 1119 aa33.19■■■□□ 2.9
LIG3-208ENST00000586407 OGDHLQ9ULD0 1010 aa33.19■■■□□ 2.9
LIG3-208ENST00000586407 ZNF213O14771 459 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 CNGA1P29973 690 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 NOVP48745 357 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 SNAP25P60880 206 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 KCTD2Q14681 263 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 OLFML2BQ68BL8 750 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 LHX8Q68G74 356 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 SKAP1Q86WV1 359 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 MAML3Q96JK9 1138 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 TMEM47Q9BQJ4 181 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 DSCC1Q9BVC3 393 aa33.18■■■□□ 2.9
LIG3-208ENST00000586407 STAT2P52630 851 aa33.17■■■□□ 2.9
LIG3-208ENST00000586407 CCDC96Q2M329 555 aa33.17■■■□□ 2.9
LIG3-208ENST00000586407 PRAMEF19Q5SWL8 479 aa33.17■■■□□ 2.9
LIG3-208ENST00000586407 ZKSCAN3Q9BRR0 538 aa33.17■■■□□ 2.9
LIG3-208ENST00000586407 H0YGN5 161 aa33.16■■■□□ 2.9
LIG3-208ENST00000586407 CYBAP13498 195 aa33.16■■■□□ 2.9
LIG3-208ENST00000586407 HTATIP2Q9BUP3 242 aa33.16■■■□□ 2.9
LIG3-208ENST00000586407 SMCHD1A6NHR9 2005 aa33.15■■■□□ 2.9
LIG3-208ENST00000586407 CHMLP26374 656 aa33.15■■■□□ 2.9
LIG3-208ENST00000586407 COPB2P35606 906 aa33.15■■■□□ 2.9
LIG3-208ENST00000586407 RCSD1Q6JBY9 416 aa33.15■■■□□ 2.9
LIG3-208ENST00000586407 RNF41Q9H4P4 317 aaPredicted RBP33.15■■■□□ 2.9
LIG3-208ENST00000586407 TCP11L1Q9NUJ3 509 aa33.15■■■□□ 2.9
LIG3-208ENST00000586407 SLC5A4Q9NY91 659 aa33.15■■■□□ 2.9
LIG3-208ENST00000586407 FRMPD2Q68DX3 1309 aaPredicted RBP33.14■■■□□ 2.9
LIG3-208ENST00000586407 ATP2A1O14983 1001 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 TOP1P11387 765 aaKnown RBP33.14■■■□□ 2.9
LIG3-208ENST00000586407 ANO1Q5XXA6 986 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 TTBK2Q6IQ55 1244 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 NECAB2Q7Z6G3 386 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 FAM160B2Q86V87 743 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 ANKLE1Q8NAG6 615 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 HOMER2Q9NSB8 354 aa33.14■■■□□ 2.9
LIG3-208ENST00000586407 TAL1P17542 331 aaPredicted RBP33.13■■■□□ 2.89
LIG3-208ENST00000586407 ZNF792Q3KQV3 632 aa33.13■■■□□ 2.89
LIG3-208ENST00000586407 CHURC1Q8WUH1 139 aa33.13■■■□□ 2.89
LIG3-208ENST00000586407 DDX20Q9UHI6 824 aaKnown RBP33.13■■■□□ 2.89
LIG3-208ENST00000586407 B4E1Z4 1266 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 KDM4AO75164 1064 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 PCP11498 1178 aaKnown RBP33.12■■■□□ 2.89
LIG3-208ENST00000586407 CCDC174Q6PII3 467 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 ESR2Q92731 530 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 AGBL1Q96MI9 1066 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 GPCPD1Q9NPB8 672 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 PRR12Q9ULL5 1215 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 MCM3APO60318 1980 aa33.12■■■□□ 2.89
LIG3-208ENST00000586407 ZNF536O15090 1300 aa33.11■■■□□ 2.89
LIG3-208ENST00000586407 CAPN2P17655 700 aa33.11■■■□□ 2.89
LIG3-208ENST00000586407 SLC16A2P36021 539 aa33.11■■■□□ 2.89
LIG3-208ENST00000586407 IMMTQ16891 758 aaKnown RBP33.11■■■□□ 2.89
LIG3-208ENST00000586407 DCAF4Q8WV16 495 aa33.11■■■□□ 2.89
LIG3-208ENST00000586407 RAD50Q92878 1312 aa33.1■■■□□ 2.89
LIG3-208ENST00000586407 PTH1RQ03431 593 aa33.1■■■□□ 2.89
LIG3-208ENST00000586407 DDX11Q96FC9 970 aa33.1■■■□□ 2.89
LIG3-208ENST00000586407 C11orf49Q9H6J7 331 aa33.1■■■□□ 2.89
LIG3-208ENST00000586407 CTNNA3Q9UI47 895 aa33.09■■■□□ 2.89
LIG3-208ENST00000586407 PFASO15067 1338 aa33.08■■■□□ 2.89
LIG3-208ENST00000586407 OAZ1P54368 228 aa33.08■■■□□ 2.89
LIG3-208ENST00000586407 PLA2G6O60733 806 aa33.07■■■□□ 2.88
LIG3-208ENST00000586407 PDHBP11177 359 aa33.07■■■□□ 2.88
LIG3-208ENST00000586407 TINF2Q9BSI4 451 aa33.07■■■□□ 2.88
LIG3-208ENST00000586407 DNAJC25-GNG10A0A024R161 153 aa33.06■■■□□ 2.88
LIG3-208ENST00000586407 ANKRD35Q8N283 1001 aa33.06■■■□□ 2.88
LIG3-208ENST00000586407 RUFY2Q8WXA3 655 aa33.06■■■□□ 2.88
LIG3-208ENST00000586407 RNF146Q9NTX7 359 aa33.06■■■□□ 2.88
LIG3-208ENST00000586407 EVI5O60447 810 aa33.05■■■□□ 2.88
LIG3-208ENST00000586407 FDX1P10109 184 aa33.05■■■□□ 2.88
LIG3-208ENST00000586407 ALAS1P13196 640 aa33.05■■■□□ 2.88
LIG3-208ENST00000586407 CHST13Q8NET6 341 aa33.05■■■□□ 2.88
LIG3-208ENST00000586407 TTC14Q96N46 770 aa33.05■■■□□ 2.88
LIG3-208ENST00000586407 DIS3Q9Y2L1 958 aaKnown RBP33.05■■■□□ 2.88
LIG3-208ENST00000586407 SGSM2O43147 1006 aa33.04■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms