RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 RAPGEF3O95398 923 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 OXCT1P55809 520 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 LRRC41Q15345 812 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 LRRFIP1Q32MZ4 808 aaKnown RBP6.51□□□□□ -1.37
SS18-223ENST00000583595 MAP9Q49MG5 647 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 CT47A1Q5JQC4 288 aaPredicted RBP6.51□□□□□ -1.37
SS18-223ENST00000583595 KIAA1211LQ6NV74 962 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 ZNF574Q6ZN55 896 aaPredicted RBP6.51□□□□□ -1.37
SS18-223ENST00000583595 HDXQ7Z353 690 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 SPRED2Q7Z698 418 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 ZNF507Q8TCN5 953 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 PLPPR2Q96GM1 343 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 CCDC136Q96JN2 1154 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 PRDM10Q9NQV6 1147 aa6.51□□□□□ -1.37
SS18-223ENST00000583595 PRAMEF27A3QJZ7 478 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 SLC22A31A6NKX4 558 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 HTR3BO95264 441 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 RHBDL3P58872 404 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 TTF1Q15361 905 aaPredicted RBP6.5□□□□□ -1.37
SS18-223ENST00000583595 NFE2Q16621 373 aaPredicted RBP6.5□□□□□ -1.37
SS18-223ENST00000583595 FAM209AQ5JX71 171 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 CYFIP1Q7L576 1253 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 SMC5Q8IY18 1101 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 KCT2Q8NC54 265 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 TMEM40Q8WWA1 233 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 ATG4CQ96DT6 458 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 MISP3Q96FF7 219 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 HEXIM2Q96MH2 286 aaKnown RBP6.5□□□□□ -1.37
SS18-223ENST00000583595 SLC26A8Q96RN1 970 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 MKNK2Q9HBH9 465 aa6.5□□□□□ -1.37
SS18-223ENST00000583595 SUSD5O60279 629 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 DNAJA2O60884 412 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 RFPL3O75679 317 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 CEACAM5P06731 702 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 ITIH2P19823 946 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 CCNFP41002 786 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 GUCY2FP51841 1108 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 NCAPHQ15003 741 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 IFI16Q16666 785 aaKnown RBP6.49□□□□□ -1.37
SS18-223ENST00000583595 LONRF2Q1L5Z9 754 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 SLC10A6Q3KNW5 377 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 WIPI1Q5MNZ9 446 aaPredicted RBP6.49□□□□□ -1.37
SS18-223ENST00000583595 CNNM4Q6P4Q7 775 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 CBLL1Q75N03 491 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 FAM214BQ7L5A3 538 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 STRA8Q7Z7C7 330 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 RNF180Q86T96 592 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 WFDC3Q8IUB2 231 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 ATL2Q8NHH9 583 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 EXOC2Q96KP1 924 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 SLC9A7Q96T83 725 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 GTF2IRD1Q9UHL9 959 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 VAV3Q9UKW4 847 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 PLAGL2Q9UPG8 496 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 SNCAIPQ9Y6H5 919 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 PRR36Q9H6K5 1346 aa6.49□□□□□ -1.37
SS18-223ENST00000583595 MEIS3P2A8K0S8 358 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 GSG1L2A8MUP6 293 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 ALG1L2C9J202 215 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 NME1P15531 152 aaKnown RBP6.48□□□□□ -1.37
SS18-223ENST00000583595 SDSP20132 328 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 SOX5P35711 763 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 CD96P40200 585 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 PRKCQQ04759 706 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 BIRC2Q13490 618 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 PLCL1Q15111 1095 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 INTS3Q68E01 1043 aaKnown RBP6.48□□□□□ -1.37
SS18-223ENST00000583595 ARMCX6Q7L4S7 300 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 LRRC47Q8N1G4 583 aaKnown RBP6.48□□□□□ -1.37
SS18-223ENST00000583595 KLHL6Q8WZ60 621 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 KISS1RQ969F8 398 aaPredicted RBP6.48□□□□□ -1.37
SS18-223ENST00000583595 WNT10AQ9GZT5 417 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 FBRSQ9HAH7 460 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 REV1Q9UBZ9 1251 aa6.48□□□□□ -1.37
SS18-223ENST00000583595 TMEM265A0A087WTH1 108 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 IGF2BP3O00425 579 aaKnown RBP eCLIP6.47□□□□□ -1.37
SS18-223ENST00000583595 TSPAN6O43657 245 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 KATNA1O75449 491 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 LRIG2O94898 1065 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 EOMESO95936 686 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 CD8BP10966 210 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 PLCG1P19174 1290 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 ETF1P62495 437 aaKnown RBP6.47□□□□□ -1.37
SS18-223ENST00000583595 SLBPQ14493 270 aaKnown RBP eCLIP6.47□□□□□ -1.37
SS18-223ENST00000583595 AOC3Q16853 763 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 GNPTABQ3T906 1256 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 YOD1Q5VVQ6 348 aaPredicted RBP6.47□□□□□ -1.37
SS18-223ENST00000583595 OVOS1Q6IE37 1185 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 C14orf80Q86SX3 495 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 HRASLS5Q96KN8 279 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 RPS6KC1Q96S38 1066 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 KIF2CQ99661 725 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 DHRS4Q9BTZ2 278 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 TARS2Q9BW92 718 aaKnown RBP6.47□□□□□ -1.37
SS18-223ENST00000583595 PRDM16Q9HAZ2 1276 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 NCOA5Q9HCD5 579 aaKnown RBP6.47□□□□□ -1.37
SS18-223ENST00000583595 MCM8Q9UJA3 840 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 RNF114Q9Y508 228 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 SLC12A7Q9Y666 1083 aa6.47□□□□□ -1.37
SS18-223ENST00000583595 CCDC163A0A0D9SF12 145 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms