RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 PARP1P09874 1014 aaKnown RBP13.72□□□□□ -0.21
SHMT1-208ENST00000582352 PCP11498 1178 aaKnown RBP13.72□□□□□ -0.21
SHMT1-208ENST00000582352 SCG2P13521 617 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 CCDC122Q5T0U0 273 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 SUSD4Q5VX71 490 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 BCL9O00512 1426 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 LONP1P36776 959 aaKnown RBP13.72□□□□□ -0.21
SHMT1-208ENST00000582352 CHRNDQ07001 517 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 KIAA1328Q86T90 577 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 DNAJC7Q99615 494 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 FAM204AQ9H8W3 233 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 VIPAS39Q9H9C1 493 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 SAR1BQ9Y6B6 198 aa13.72□□□□□ -0.21
SHMT1-208ENST00000582352 RPS6KA5O75582 802 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 USP14P54578 494 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 CKAP4Q07065 602 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 STIM1Q13586 685 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 ARL6IP4Q66PJ3 421 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 MB21D1Q8N884 522 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 RIOK1Q9BRS2 568 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 BRIP1Q9BX63 1249 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 GNL3LQ9NVN8 582 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 MAGEC2Q9UBF1 373 aaPredicted RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 HDAC6Q9UBN7 1215 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 A0A1W2PQC6 194 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 TRIM49BA6NDI0 452 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 TRIM66O15016 1216 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 IPO7O95373 1038 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 EEF1GP26641 437 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 KRT83P78385 493 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 IL17AQ16552 155 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 SRBD1Q8N5C6 995 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 ZFP91Q96JP5 570 aaPredicted RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 TRIM47Q96LD4 638 aa13.71□□□□□ -0.21
SHMT1-208ENST00000582352 BAZ2BQ9UIF8 2168 aaKnown RBP13.71□□□□□ -0.21
SHMT1-208ENST00000582352 PDS5AQ29RF7 1337 aaKnown RBP13.71□□□□□ -0.22
SHMT1-208ENST00000582352 KRT86O43790 486 aa13.71□□□□□ -0.22
SHMT1-208ENST00000582352 RNF40O75150 1001 aa13.71□□□□□ -0.22
SHMT1-208ENST00000582352 ATP1A1P05023 1023 aaKnown RBP13.71□□□□□ -0.22
SHMT1-208ENST00000582352 ADSSL1Q8N142 457 aa13.71□□□□□ -0.22
SHMT1-208ENST00000582352 CAGE1Q8TC20 777 aa13.71□□□□□ -0.22
SHMT1-208ENST00000582352 RPGRIP1Q96KN7 1286 aa13.71□□□□□ -0.22
SHMT1-208ENST00000582352 DISC1Q9NRI5 854 aa13.71□□□□□ -0.22
SHMT1-208ENST00000582352 MKRN1Q9UHC7 482 aaKnown RBP13.71□□□□□ -0.22
SHMT1-208ENST00000582352 DYNLL1P63167 89 aaKnown RBP13.7□□□□□ -0.22
SHMT1-208ENST00000582352 CAPZA3Q96KX2 299 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 CAPN11Q9UMQ6 739 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 PSMA7O14818 248 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 CALML3P27482 149 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 CYLC1P35663 651 aaPredicted RBP13.7□□□□□ -0.22
SHMT1-208ENST00000582352 HERVK_113P62684 666 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 PFKFB3Q16875 520 aaPredicted RBP13.7□□□□□ -0.22
SHMT1-208ENST00000582352 IRF2BP1Q8IU81 584 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 AFAP1L1Q8TED9 768 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 JAKMIP2Q96AA8 810 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 MMS19Q96T76 1030 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 THAP9Q9H5L6 903 aa13.7□□□□□ -0.22
SHMT1-208ENST00000582352 ZNHIT6Q9NWK9 470 aaKnown RBP13.7□□□□□ -0.22
SHMT1-208ENST00000582352 CACNA1SQ13698 1873 aa13.69□□□□□ -0.22
SHMT1-208ENST00000582352 TARSL2A2RTX5 802 aaKnown RBP13.69□□□□□ -0.22
SHMT1-208ENST00000582352 TRIM21P19474 475 aaKnown RBP13.69□□□□□ -0.22
SHMT1-208ENST00000582352 GYG1P46976 350 aa13.69□□□□□ -0.22
SHMT1-208ENST00000582352 AARSP49588 968 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHMT1-208ENST00000582352 ZNF804BA4D1E1 1349 aa13.69□□□□□ -0.22
SHMT1-208ENST00000582352 EIF5P55010 431 aaKnown RBP13.69□□□□□ -0.22
SHMT1-208ENST00000582352 MAPK8IP2Q13387 824 aaPredicted RBP13.69□□□□□ -0.22
SHMT1-208ENST00000582352 PAPD7Q5XG87 772 aaKnown RBP13.69□□□□□ -0.22
SHMT1-208ENST00000582352 CTR9Q6PD62 1173 aa13.69□□□□□ -0.22
SHMT1-208ENST00000582352 USP17L12C9JPN9 530 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 USP17L21D6R901 530 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 NMT2O60551 498 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 SRGAP2O75044 1071 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 DNM2P50570 870 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 IQCEQ6IPM2 695 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 WDR59Q6PJI9 974 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 CRACR2AQ9BSW2 395 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 RSPH14Q9UHP6 348 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 HPCAL4Q9UM19 191 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 TFR2Q9UP52 801 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 PHLPP1O60346 1717 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 COL1A1P02452 1464 aaPredicted RBP13.68□□□□□ -0.22
SHMT1-208ENST00000582352 FGRP09769 529 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 PMS1P54277 932 aaKnown RBP13.68□□□□□ -0.22
SHMT1-208ENST00000582352 KCNB1Q14721 858 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 PARP10Q53GL7 1025 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 BLIDQ8IZY5 108 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 ZNF507Q8TCN5 953 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 A0A1B0GUL6 1792 aa13.68□□□□□ -0.22
SHMT1-208ENST00000582352 B4DLN1 442 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 KIF5BP33176 963 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 MEA1Q16626 185 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 DTHD1Q6ZMT9 781 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 ZNF662Q6ZS27 426 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 NOC3LQ8WTT2 800 aaKnown RBP13.67□□□□□ -0.22
SHMT1-208ENST00000582352 COG1Q8WTW3 980 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 EXOC1Q9NV70 894 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 RREB1Q92766 1687 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 ORC4O43929 436 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 MYL1P05976 194 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 UBA7P41226 1012 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms