RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ATG4CQ96DT6 458 aa18.09■□□□□ 0.49
SS18-216ENST00000580751 IPO9Q96P70 1041 aaKnown RBP18.09■□□□□ 0.49
SS18-216ENST00000580751 MORF4L1Q9UBU8 362 aa18.09■□□□□ 0.49
SS18-216ENST00000580751 FDX1P10109 184 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 SP3Q02447 781 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 GRM4Q14833 912 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 BTNL9Q6UXG8 535 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 HSCBQ8IWL3 235 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 KIFC2Q96AC6 838 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 MAP3K14Q99558 947 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 PAGR1Q9BTK6 254 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 AGXT2Q9BYV1 514 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 GPCPD1Q9NPB8 672 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 ADAMTS5Q9UNA0 930 aa18.08■□□□□ 0.48
SS18-216ENST00000580751 VWA5AO00534 786 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 FKTNO75072 461 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 GOLGA8HP0CJ92 632 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 KIF5BP33176 963 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 RCAN1P53805 252 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 APOA5Q6Q788 366 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 GPRC5AQ8NFJ5 357 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 CTCFLQ8NI51 663 aaPredicted RBP18.07■□□□□ 0.48
SS18-216ENST00000580751 NUP133Q8WUM0 1156 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 ZNF296Q8WUU4 475 aaPredicted RBP18.07■□□□□ 0.48
SS18-216ENST00000580751 BRF1Q92994 677 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 PDRG1Q9NUG6 133 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 RBPJLQ9UBG7 517 aa18.07■□□□□ 0.48
SS18-216ENST00000580751 CTDP1Q9Y5B0 961 aaPredicted RBP18.07■□□□□ 0.48
SS18-216ENST00000580751 KLF18A0A0U1RQI7 1052 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 ZBED4O75132 1171 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 LBX1P52954 281 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 ERVK-9P63128 1117 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 ERVK-24P63145 666 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 CCNA1P78396 465 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 KIF22Q14807 665 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 SYDE2Q5VT97 1194 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 TTBK2Q6IQ55 1244 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 ERO1AQ96HE7 468 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 MYL10Q9BUA6 226 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 TXNRD2Q9NNW7 524 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 DAXXQ9UER7 740 aaPredicted RBP18.06■□□□□ 0.48
SS18-216ENST00000580751 PRR12Q9ULL5 1215 aa18.06■□□□□ 0.48
SS18-216ENST00000580751 PALM3A6NDB9 673 aaPredicted RBP18.05■□□□□ 0.48
SS18-216ENST00000580751 ZBTB43O43298 467 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 SLC16A2P36021 539 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 LACTBP83111 547 aaPredicted RBP18.05■□□□□ 0.48
SS18-216ENST00000580751 POTEEQ6S8J3 1075 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 MICU3Q86XE3 530 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 ZSCAN31Q96LW9 406 aaPredicted RBP18.05■□□□□ 0.48
SS18-216ENST00000580751 SLC38A10Q9HBR0 1119 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 BTBD7Q9P203 1132 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 MAD2L2Q9UI95 211 aa18.05■□□□□ 0.48
SS18-216ENST00000580751 GOLGA8BA8MQT2 603 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 KLRF2D3W0D1 207 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 K7ELQ4 463 aaPredicted RBP18.04■□□□□ 0.48
SS18-216ENST00000580751 CNMDO75829 334 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 GNAQP50148 359 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 OAZ1P54368 228 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 APOBRQ0VD83 1088 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 ARHGEF6Q15052 776 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 REPS2Q8NFH8 660 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 BRPF3Q9ULD4 1205 aa18.04■□□□□ 0.48
SS18-216ENST00000580751 NAP1L2Q9ULW6 460 aaPredicted RBP18.04■□□□□ 0.48
SS18-216ENST00000580751 ATP2A1O14983 1001 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 DHX16O60231 1041 aaKnown RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 COPB2P35606 906 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 FCGRTP55899 365 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 EVCP57679 992 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 TOB2Q14106 344 aaPredicted RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 PLS1Q14651 629 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 TMEM132BQ14DG7 1078 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 PPP2R5BQ15173 497 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 CCAR1Q8IX12 1150 aaKnown RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 STAG2Q8N3U4 1231 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 FANCBQ8NB91 859 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 LZTS2Q9BRK4 669 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 TEX13BQ9BXU2 312 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 SPATC1LQ9H0A9 340 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 RANBP17Q9H2T7 1088 aaKnown RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 PRDM10Q9NQV6 1147 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 SH2B1Q9NRF2 756 aaPredicted RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 RBM28Q9NW13 759 aaKnown RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 PNMA2Q9UL42 364 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 ZNF214Q9UL59 606 aaPredicted RBP18.03■□□□□ 0.48
SS18-216ENST00000580751 LIMCH1Q9UPQ0 1083 aa18.03■□□□□ 0.48
SS18-216ENST00000580751 COL11A1P12107 1806 aaPredicted RBP18.02■□□□□ 0.48
SS18-216ENST00000580751 GOLGA8AA7E2F4 631 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 RXRAP19793 462 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 MAPK4P31152 587 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 STAT3P40763 770 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 RTN1Q16799 776 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 SHCBP1Q8NEM2 672 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 UBA5Q9GZZ9 404 aa18.02■□□□□ 0.48
SS18-216ENST00000580751 NID2Q14112 1375 aa18.02■□□□□ 0.47
SS18-216ENST00000580751 CCDC196A0A1B0GTZ2 297 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 PEX10O60683 326 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 SLC25A27O95847 323 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 GNRH1P01148 92 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 SMARCA1P28370 1054 aa18.01■□□□□ 0.47
SS18-216ENST00000580751 METAP2P50579 478 aaKnown RBP eCLIP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms