RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 CDKAL1Q5VV42 579 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 USP17L2Q6R6M4 530 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 CLEC10AQ8IUN9 316 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 LRRC15Q8TF66 581 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 NELFBQ8WX92 580 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 CNKSR2Q8WXI2 1034 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 MAD2L2Q9UI95 211 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 WNK3Q9BYP7 1800 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 SEMA3EO15041 775 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 KIF5BP33176 963 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 MMP14P50281 582 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 EIF6P56537 245 aaKnown RBP11.85□□□□□ -0.51
TOP3A-209ENST00000580095 FAM196AQ6ZSG2 479 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 ZNF444Q8N0Y2 327 aaPredicted RBP11.85□□□□□ -0.51
TOP3A-209ENST00000580095 C4orf32Q8N8J7 132 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 CCDC34Q96HJ3 373 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 TMEM47Q9BQJ4 181 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 TFR2Q9UP52 801 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 CCP110O43303 1012 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 SLURP2P0DP57 97 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 MKRN1Q9UHC7 482 aaKnown RBP11.85□□□□□ -0.51
TOP3A-209ENST00000580095 PUF60Q9UHX1 559 aaKnown RBP11.85□□□□□ -0.51
TOP3A-209ENST00000580095 MORC2Q9Y6X9 1032 aaPredicted RBP11.85□□□□□ -0.51
TOP3A-209ENST00000580095 MYH6P13533 1939 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 CNTNAP4Q9C0A0 1308 aa11.85□□□□□ -0.51
TOP3A-209ENST00000580095 TADA3O75528 432 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 RPN1P04843 607 aaKnown RBP11.84□□□□□ -0.51
TOP3A-209ENST00000580095 H2AFXP16104 143 aaPredicted RBP11.84□□□□□ -0.51
TOP3A-209ENST00000580095 HPS3Q969F9 1004 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 UBA5Q9GZZ9 404 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 PCDHA6Q9UN73 950 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 PCDHA4Q9UN74 947 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 PCDHA8Q9Y5H6 950 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 ADGRG1Q9Y653 693 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 F8W031 263 aaPredicted RBP11.84□□□□□ -0.51
TOP3A-209ENST00000580095 MYO1BO43795 1136 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 BMP15O95972 392 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 ERCC3P19447 782 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 GPSM2P81274 684 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 PAK1Q13153 545 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 LETM2Q2VYF4 491 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 SBK1Q52WX2 424 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 NAALADL2Q58DX5 795 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 KIFC2Q96AC6 838 aa11.84□□□□□ -0.51
TOP3A-209ENST00000580095 NUP88Q99567 741 aaPredicted RBP11.84□□□□□ -0.51
TOP3A-209ENST00000580095 KLRF2D3W0D1 207 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 MFAP3LO75121 409 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 UFL1O94874 794 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 CCDC175P0C221 793 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 PCP11498 1178 aaKnown RBP11.83□□□□□ -0.51
TOP3A-209ENST00000580095 PPP2R3AQ06190 1150 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 KRT222Q8N1A0 295 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 CNBD1Q8NA66 436 aa11.83□□□□□ -0.51
TOP3A-209ENST00000580095 KCNJ18B7U540 433 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 NKRFO15226 690 aaKnown RBP eCLIP11.83□□□□□ -0.52
TOP3A-209ENST00000580095 RASA1P20936 1047 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 PBX1P40424 430 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 BTDP43251 543 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 KCNJ12Q14500 433 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 FILIP1LQ4L180 1135 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 ZNF569Q5MCW4 686 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 DTHD1Q6ZMT9 781 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 ZNF771Q7L3S4 317 aaPredicted RBP11.83□□□□□ -0.52
TOP3A-209ENST00000580095 TRIM10Q9UDY6 481 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 GTPBP6O43824 516 aaPredicted RBP11.83□□□□□ -0.52
TOP3A-209ENST00000580095 UBA7P41226 1012 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 PSEN1P49768 467 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 ERVK-24P63145 666 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 UBXN1Q04323 297 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 SLC20A2Q08357 652 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 SLF1Q9BQI6 1058 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 DISC1Q9NRI5 854 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 FHOD1Q9Y613 1164 aa11.83□□□□□ -0.52
TOP3A-209ENST00000580095 FRMPD2Q68DX3 1309 aaPredicted RBP11.82□□□□□ -0.52
TOP3A-209ENST00000580095 IRS2Q9Y4H2 1338 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 CCNT1O60563 726 aaKnown RBP11.82□□□□□ -0.52
TOP3A-209ENST00000580095 CALML3P27482 149 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 COPB1P53618 953 aaKnown RBP11.82□□□□□ -0.52
TOP3A-209ENST00000580095 PICALMQ13492 652 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 TCP11X2Q5H9J9 407 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 JAKMIP3Q5VZ66 844 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 SPTY2D1Q68D10 685 aaPredicted RBP11.82□□□□□ -0.52
TOP3A-209ENST00000580095 FCHSD1Q86WN1 690 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 DGKHQ86XP1 1220 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 CHP1Q99653 195 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 STXBP3O00186 592 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 MYCNP04198 464 aaPredicted RBP11.82□□□□□ -0.52
TOP3A-209ENST00000580095 NAPAP54920 295 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 MAP3K9P80192 1104 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 GRAPQ13588 217 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 GRM4Q14833 912 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 TRAPPC3LQ5T215 181 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 IRF2BP1Q8IU81 584 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 TEX11Q8IYF3 940 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 GRAPLQ8TC17 118 aaPredicted RBP11.82□□□□□ -0.52
TOP3A-209ENST00000580095 PANX2Q96RD6 677 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 EYA3Q99504 573 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 LRRC4BQ9NT99 713 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 TMEM260Q9NX78 707 aa11.82□□□□□ -0.52
TOP3A-209ENST00000580095 BIN2Q9UBW5 565 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms