RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PPP1R11O60927 126 aaPredicted RBP29.03■■■□□ 2.24
SHMT1-207ENST00000580002 SMARCA1P28370 1054 aa29.03■■■□□ 2.24
SHMT1-207ENST00000580002 WWC2Q6AWC2 1192 aa29.03■■■□□ 2.24
SHMT1-207ENST00000580002 OTUD5Q96G74 571 aa29.03■■■□□ 2.24
SHMT1-207ENST00000580002 KIF28PB7ZC32 967 aa29.02■■■□□ 2.24
SHMT1-207ENST00000580002 KIF3CO14782 793 aa29.02■■■□□ 2.24
SHMT1-207ENST00000580002 TAL1P17542 331 aaPredicted RBP29.02■■■□□ 2.24
SHMT1-207ENST00000580002 IKQ13123 557 aaPredicted RBP29.02■■■□□ 2.24
SHMT1-207ENST00000580002 MCTP1Q6DN14 999 aa29.02■■■□□ 2.24
SHMT1-207ENST00000580002 MYH6P13533 1939 aa29.02■■■□□ 2.24
SHMT1-207ENST00000580002 RESTQ13127 1097 aa29.01■■■□□ 2.23
SHMT1-207ENST00000580002 WASF1Q92558 559 aa29.01■■■□□ 2.23
SHMT1-207ENST00000580002 RRP36Q96EU6 259 aaKnown RBP29.01■■■□□ 2.23
SHMT1-207ENST00000580002 IRF6O14896 467 aa29.01■■■□□ 2.23
SHMT1-207ENST00000580002 VCAM1P19320 739 aa29.01■■■□□ 2.23
SHMT1-207ENST00000580002 GBA2Q9HCG7 927 aaPredicted RBP29.01■■■□□ 2.23
SHMT1-207ENST00000580002 GJA5P36382 358 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 SYDE2Q5VT97 1194 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 BTNL9Q6UXG8 535 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 HEATR3Q7Z4Q2 680 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 OXER1Q8TDS5 423 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 COA7Q96BR5 231 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 MTMR8Q96EF0 704 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 PRR12Q9ULL5 1215 aa29■■■□□ 2.23
SHMT1-207ENST00000580002 NPY5RQ15761 445 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 KIFC2Q96AC6 838 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 SPDYE5A6NIY4 337 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 STXBP3O00186 592 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 QRICH1Q2TAL8 776 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 ERO1BQ86YB8 467 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 OPTNQ96CV9 577 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 PHF20Q9BVI0 1012 aa28.98■■■□□ 2.23
SHMT1-207ENST00000580002 RPAP3Q9H6T3 665 aaPredicted RBP28.98■■■□□ 2.23
SHMT1-207ENST00000580002 STAT2P52630 851 aa28.97■■■□□ 2.23
SHMT1-207ENST00000580002 KIF23Q02241 960 aaPredicted RBP28.97■■■□□ 2.23
SHMT1-207ENST00000580002 BTBD18B2RXH4 712 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 WDR46O15213 610 aaKnown RBP28.96■■■□□ 2.23
SHMT1-207ENST00000580002 MMP1P03956 469 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 USP14P54578 494 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 TRIM29Q14134 588 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 CDC37Q16543 378 aaPredicted RBP28.96■■■□□ 2.23
SHMT1-207ENST00000580002 LPAR1Q92633 364 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 PNMA6FA0A0J9YX94 578 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 PPATQ06203 517 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 NR5A1Q13285 461 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 NOM1Q5C9Z4 860 aaKnown RBP28.96■■■□□ 2.23
SHMT1-207ENST00000580002 SLC10A4Q96EP9 437 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 TANGO6Q9C0B7 1094 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 BARHL2Q9NY43 387 aa28.96■■■□□ 2.23
SHMT1-207ENST00000580002 SEC63Q9UGP8 760 aaKnown RBP28.96■■■□□ 2.23
SHMT1-207ENST00000580002 C19orf81C9J6K1 198 aa28.95■■■□□ 2.22
SHMT1-207ENST00000580002 ZBTB5O15062 677 aa28.95■■■□□ 2.22
SHMT1-207ENST00000580002 BAG4O95429 457 aaKnown RBP28.95■■■□□ 2.22
SHMT1-207ENST00000580002 RBM27Q9P2N5 1060 aaKnown RBP28.95■■■□□ 2.22
SHMT1-207ENST00000580002 TREML2Q5T2D2 321 aa28.94■■■□□ 2.22
SHMT1-207ENST00000580002 DIS3L2Q8IYB7 885 aaKnown RBP28.94■■■□□ 2.22
SHMT1-207ENST00000580002 C2orf69Q8N8R5 385 aa28.94■■■□□ 2.22
SHMT1-207ENST00000580002 C12orf42Q96LP6 360 aa28.94■■■□□ 2.22
SHMT1-207ENST00000580002 FEM1BQ9UK73 627 aa28.94■■■□□ 2.22
SHMT1-207ENST00000580002 DNM1Q05193 864 aaKnown RBP28.93■■■□□ 2.22
SHMT1-207ENST00000580002 MKRN3Q13064 507 aaKnown RBP28.93■■■□□ 2.22
SHMT1-207ENST00000580002 SH3D19Q5HYK7 790 aa28.93■■■□□ 2.22
SHMT1-207ENST00000580002 WNK4Q96J92 1243 aa28.93■■■□□ 2.22
SHMT1-207ENST00000580002 NLRP5P59047 1200 aa28.93■■■□□ 2.22
SHMT1-207ENST00000580002 EARS2Q5JPH6 523 aaKnown RBP28.93■■■□□ 2.22
SHMT1-207ENST00000580002 CHURC1Q8WUH1 139 aa28.93■■■□□ 2.22
SHMT1-207ENST00000580002 CCDC174Q6PII3 467 aa28.92■■■□□ 2.22
SHMT1-207ENST00000580002 TMOD4Q9NZQ9 345 aa28.92■■■□□ 2.22
SHMT1-207ENST00000580002 FAM205CA6NFA0 338 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 PLA2G6O60733 806 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 FLOT1O75955 427 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 NAPAP54920 295 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 PPIL2Q13356 520 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 RASGRP4Q8TDF6 673 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 GDPD2Q9HCC8 539 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 TFIP11Q9UBB9 837 aaKnown RBP28.91■■■□□ 2.22
SHMT1-207ENST00000580002 PASKQ96RG2 1323 aa28.91■■■□□ 2.22
SHMT1-207ENST00000580002 PDIA4P13667 645 aaKnown RBP28.9■■■□□ 2.22
SHMT1-207ENST00000580002 MOGSQ13724 837 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 GADL1Q6ZQY3 521 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 FAM160B2Q86V87 743 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 SLF1Q9BQI6 1058 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 FTOQ9C0B1 505 aaKnown RBP eCLIP28.9■■■□□ 2.22
SHMT1-207ENST00000580002 KCNH4Q9UQ05 1017 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 A0A0G2JLL6 359 aaPredicted RBP28.9■■■□□ 2.22
SHMT1-207ENST00000580002 XBP1P17861 261 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 FKBP1BP68106 108 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 USH1GQ495M9 461 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 PRRT2Q7Z6L0 340 aaPredicted RBP28.9■■■□□ 2.22
SHMT1-207ENST00000580002 RBM46Q8TBY0 533 aaKnown RBP28.9■■■□□ 2.22
SHMT1-207ENST00000580002 SH3GLB2Q9NR46 395 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 CNPY2Q9Y2B0 182 aa28.9■■■□□ 2.22
SHMT1-207ENST00000580002 SMCHD1A6NHR9 2005 aa28.89■■■□□ 2.22
SHMT1-207ENST00000580002 U2AF2P26368 475 aaKnown RBP eCLIP28.89■■■□□ 2.228e-8■■■■■ 27.5
SHMT1-207ENST00000580002 CLEC17AQ6ZS10 378 aa28.89■■■□□ 2.22
SHMT1-207ENST00000580002 RANBP17Q9H2T7 1088 aaKnown RBP28.89■■■□□ 2.22
SHMT1-207ENST00000580002 NFKBIBQ15653 356 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 CATSPERGQ6ZRH7 1159 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 ATG4CQ96DT6 458 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 ZSCAN16Q9H4T2 348 aaPredicted RBP28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms