RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 Q3C1V9 767 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 ADCK5Q3MIX3 580 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 FBXO46Q6PJ61 603 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-214ENST00000575431 NFXL1Q6ZNB6 911 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 KCTD1Q719H9 257 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 CHST3Q7LGC8 479 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 OTOP1Q7RTM1 612 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 FBXL16Q8N461 479 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 JAKMIP1Q96N16 626 aaKnown RBP11.17□□□□□ -0.62
CCDC40-214ENST00000575431 TEX13BQ9BXU2 312 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 SPATC1LQ9H0A9 340 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 SLC38A10Q9HBR0 1119 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 CWC22Q9HCG8 908 aaKnown RBP11.17□□□□□ -0.62
CCDC40-214ENST00000575431 BTBD7Q9P203 1132 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 PRR12Q9ULL5 1215 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 MTMR7Q9Y216 660 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 MGAMO43451 1857 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 CNMDO75829 334 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 GNAQP50148 359 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 RCAN1P53805 252 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 FGD1P98174 961 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 TROAPQ12815 778 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 PLS1Q14651 629 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 TMEM132BQ14DG7 1078 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 PPP2R5BQ15173 497 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 C8orf34Q49A92 452 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 SYDE2Q5VT97 1194 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 POTEEQ6S8J3 1075 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 SAMD1Q6SPF0 538 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-214ENST00000575431 RIOX2Q8IUF8 465 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 CTCFLQ8NI51 663 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-214ENST00000575431 SOCS4Q8WXH5 440 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 TRIM47Q96LD4 638 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 LZTS2Q9BRK4 669 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 MOV10L1Q9BXT6 1211 aaKnown RBP11.16□□□□□ -0.62
CCDC40-214ENST00000575431 UPF2Q9HAU5 1272 aaKnown RBP11.16□□□□□ -0.62
CCDC40-214ENST00000575431 LY9Q9HBG7 655 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 ZSWIM6Q9HCJ5 1215 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 GPCPD1Q9NPB8 672 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 SRRDQ9UH36 339 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 ZNF214Q9UL59 606 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-214ENST00000575431 SLC12A7Q9Y666 1083 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 CYP46A1Q9Y6A2 500 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 IVNS1ABPQ9Y6Y0 642 aa11.16□□□□□ -0.62
CCDC40-214ENST00000575431 FRMPD2Q68DX3 1309 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-214ENST00000575431 PALM3A6NDB9 673 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-214ENST00000575431 CASTP20810 708 aaKnown RBP11.15□□□□□ -0.62
CCDC40-214ENST00000575431 RPS6KB1P23443 525 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 SMARCA1P28370 1054 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 TRAF1Q13077 416 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 IRF5Q13568 498 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 GRM4Q14833 912 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 TKFCQ3LXA3 575 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 COL13A1Q5TAT6 717 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-214ENST00000575431 TTBK2Q6IQ55 1244 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 RUFY3Q7L099 469 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 GPR142Q7Z601 462 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 PLEKHH3Q7Z736 793 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 ZNF654Q8IZM8 581 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 ABRAQ8N0Z2 381 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 CPXCR1Q8N123 301 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 IL27Q8NEV9 243 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 REPS2Q8NFH8 660 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 IL17RAQ96F46 866 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 NUDT12Q9BQG2 462 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 RANBP17Q9H2T7 1088 aaKnown RBP11.15□□□□□ -0.62
CCDC40-214ENST00000575431 SLC5A4Q9NY91 659 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 FBXO40Q9UH90 709 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 PTPN22Q9Y2R2 807 aa11.15□□□□□ -0.62
CCDC40-214ENST00000575431 SLC15A5A6NIM6 579 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 KLRF2D3W0D1 207 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 GOLGA8HP0CJ92 632 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 XRCC5P13010 732 aaKnown RBP11.14□□□□□ -0.63
CCDC40-214ENST00000575431 ERCC3P19447 782 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 PTPREP23469 700 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 CTGFP29279 349 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 SNRNP48Q6IEG0 339 aaKnown RBP11.14□□□□□ -0.63
CCDC40-214ENST00000575431 NCAPG2Q86XI2 1143 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 TRMT44Q8IYL2 757 aaKnown RBP11.14□□□□□ -0.63
CCDC40-214ENST00000575431 CHST13Q8NET6 341 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 RAET1EQ8TD07 263 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 PXYLP1Q8TE99 480 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 NUP133Q8WUM0 1156 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 AGXT2Q9BYV1 514 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 ARHGAP39Q9C0H5 1083 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 MCOLN1Q9GZU1 580 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 MAF1Q9H063 256 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 PORCNQ9H237 461 aa11.14□□□□□ -0.63
CCDC40-214ENST00000575431 COL11A1P12107 1806 aaPredicted RBP11.14□□□□□ -0.63
CCDC40-214ENST00000575431 CCDC196A0A1B0GTZ2 297 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 DHX16O60231 1041 aaKnown RBP11.13□□□□□ -0.63
CCDC40-214ENST00000575431 ICAM1P05362 532 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 FCER1AP12319 257 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 SLC16A2P36021 539 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 RGS2P41220 211 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 FLT3LGP49771 235 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 KCTD2Q14681 263 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 WDR78Q5VTH9 848 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 Q6ZUG5 572 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 NBPF11Q86T75 865 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms