RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 GNL2Q13823 731 aaKnown RBP15.77■□□□□ 0.12
CCDC40-209ENST00000573474 VGLL4Q14135 290 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 TTLL12Q14166 644 aaPredicted RBP15.77■□□□□ 0.12
CCDC40-209ENST00000573474 FAM83BQ5T0W9 1011 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 SYDE2Q5VT97 1194 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 WWC2Q6AWC2 1192 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 HEATR3Q7Z4Q2 680 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 HOMER1Q86YM7 354 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 CCDC148Q8NFR7 591 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 CCDC12Q8WUD4 166 aaPredicted RBP15.77■□□□□ 0.12
CCDC40-209ENST00000573474 SHISA4Q96DD7 197 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 FOXP1Q9H334 677 aaPredicted RBP15.77■□□□□ 0.12
CCDC40-209ENST00000573474 BRMS1Q9HCU9 246 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 NMRK2Q9NPI5 230 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 FEM1BQ9UK73 627 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 SNCAIPQ9Y6H5 919 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 C19orf81C9J6K1 198 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 STXBP3O00186 592 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 ZBTB5O15062 677 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 WDR46O15213 610 aaKnown RBP15.76■□□□□ 0.11
CCDC40-209ENST00000573474 PTMSP20962 102 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 KRT2P35908 639 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 STAT2P52630 851 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 DNM1Q05193 864 aaKnown RBP15.76■□□□□ 0.11
CCDC40-209ENST00000573474 ATL3Q6DD88 541 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 GALNT17Q6IS24 598 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 FAM160B2Q86V87 743 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 DIS3L2Q8IYB7 885 aaKnown RBP15.76■□□□□ 0.11
CCDC40-209ENST00000573474 ANKRD13AQ8IZ07 590 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 GPKOWQ92917 476 aaPredicted RBP eCLIP15.76■□□□□ 0.11
CCDC40-209ENST00000573474 ZNF396Q96N95 335 aaPredicted RBP15.76■□□□□ 0.11
CCDC40-209ENST00000573474 EMILIN3Q9NT22 766 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 MYH6P13533 1939 aa15.76■□□□□ 0.11
CCDC40-209ENST00000573474 BTBD18B2RXH4 712 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 KIF28PB7ZC32 967 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 KRT85P78386 507 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 MTMR2Q13614 643 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 FAM173BQ6P4H8 233 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 CHAMP1Q96JM3 812 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 AFG3L2Q9Y4W6 797 aa15.75■□□□□ 0.11
CCDC40-209ENST00000573474 BAZ2BQ9UIF8 2168 aaKnown RBP15.75■□□□□ 0.11
CCDC40-209ENST00000573474 UNCXA6NJT0 531 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 TRIM75PA6NK02 468 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 TRAF5O00463 557 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 NCLP19338 710 aaKnown RBP15.74■□□□□ 0.11
CCDC40-209ENST00000573474 NAPAP54920 295 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 CSPP1Q1MSJ5 1256 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 NOSTRINQ8IVI9 506 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 RBM46Q8TBY0 533 aaKnown RBP15.74■□□□□ 0.11
CCDC40-209ENST00000573474 ZNF526Q8TF50 670 aaPredicted RBP15.74■□□□□ 0.11
CCDC40-209ENST00000573474 C12orf42Q96LP6 360 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 CFAP45Q9UL16 551 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 PRR12Q9ULL5 1215 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 CNPY2Q9Y2B0 182 aa15.74■□□□□ 0.11
CCDC40-209ENST00000573474 FKBP1BP68106 108 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 PPATQ06203 517 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 NPY5RQ15761 445 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 CDC37Q16543 378 aaPredicted RBP15.73■□□□□ 0.11
CCDC40-209ENST00000573474 QRICH1Q2TAL8 776 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 LDLRAD1Q5T700 205 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 MYSM1Q5VVJ2 828 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 TYW1BQ6NUM6 668 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 PPP1R18Q6NYC8 613 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 MOB2Q70IA6 237 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 ERO1BQ86YB8 467 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 DAGLBQ8NCG7 672 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 OXER1Q8TDS5 423 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 SCAND2PQ9GZW5 306 aaPredicted RBP15.73■□□□□ 0.11
CCDC40-209ENST00000573474 ZMYND12Q9H0C1 365 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 ELP3Q9H9T3 547 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 C6orf50Q9HD87 102 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 TMOD4Q9NZQ9 345 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 PCDHA4Q9UN74 947 aa15.73■□□□□ 0.11
CCDC40-209ENST00000573474 ESYT2A0FGR8 921 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 SMCO2A6NFE2 343 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 PPP1R11O60927 126 aaPredicted RBP15.72■□□□□ 0.11
CCDC40-209ENST00000573474 PRPF40AO75400 957 aaKnown RBP15.72■□□□□ 0.11
CCDC40-209ENST00000573474 VCAM1P19320 739 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 GNA11P29992 359 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 HMGCS2P54868 508 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 TRAF1Q13077 416 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 SH3D19Q5HYK7 790 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 CHADLQ6NUI6 762 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 BLIDQ8IZY5 108 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 TMEM87AQ8NBN3 555 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 KIFC2Q96AC6 838 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 COA7Q96BR5 231 aa15.72■□□□□ 0.11
CCDC40-209ENST00000573474 TFIP11Q9UBB9 837 aaKnown RBP15.72■□□□□ 0.11
CCDC40-209ENST00000573474 SPDYE5A6NIY4 337 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 CXCL11O14625 94 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 NR5A1Q13285 461 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 FBXO11Q86XK2 927 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 PRPF38AQ8NAV1 312 aaKnown RBP15.71■□□□□ 0.11
CCDC40-209ENST00000573474 BICD2Q8TD16 824 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 TNFRSF25Q93038 417 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 CLMNQ96JQ2 1002 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 SLF1Q9BQI6 1058 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 AMNQ9BXJ7 453 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 TANGO6Q9C0B7 1094 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 RANBP17Q9H2T7 1088 aaKnown RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms