RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 L1RE1Q9UN81 338 aa19.22■□□□□ 0.67
VPS53-215ENST00000573028 CCDC194A0A1B0GVG4 234 aa19.22■□□□□ 0.67
VPS53-215ENST00000573028 UBA7P41226 1012 aa19.22■□□□□ 0.67
VPS53-215ENST00000573028 FAM84BQ96KN1 310 aaPredicted RBP19.22■□□□□ 0.67
VPS53-215ENST00000573028 BRIP1Q9BX63 1249 aa19.22■□□□□ 0.67
VPS53-215ENST00000573028 PRDX5P30044 214 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 MECOMQ03112 1051 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 WHAMMP3Q1A5X7 153 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 BLIDQ8IZY5 108 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 STAG2Q8N3U4 1231 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 MSANTD4Q8NCY6 345 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 OR8K1Q8NGG5 319 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 MCM9Q9NXL9 1143 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 MAGEC2Q9UBF1 373 aaPredicted RBP19.21■□□□□ 0.67
VPS53-215ENST00000573028 REXO2Q9Y3B8 237 aaKnown RBP19.21■□□□□ 0.67
VPS53-215ENST00000573028 TIAM2Q8IVF5 1701 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 INF2Q27J81 1249 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 LRRC10BA6NIK2 292 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 B4DLN1 442 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 PFKFB3Q16875 520 aaPredicted RBP19.21■□□□□ 0.67
VPS53-215ENST00000573028 DTHD1Q6ZMT9 781 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 IRF2BP1Q8IU81 584 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 BBXQ8WY36 941 aaPredicted RBP19.21■□□□□ 0.67
VPS53-215ENST00000573028 EXOC4Q96A65 974 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 KAT14Q9H8E8 782 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 DCP1AQ9NPI6 582 aaPredicted RBP19.21■□□□□ 0.67
VPS53-215ENST00000573028 RAB21Q9UL25 225 aa19.21■□□□□ 0.67
VPS53-215ENST00000573028 ZNF335Q9H4Z2 1342 aaPredicted RBP19.2■□□□□ 0.66
VPS53-215ENST00000573028 VGLL3A8MV65 326 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 TRIM21P19474 475 aaKnown RBP19.2■□□□□ 0.66
VPS53-215ENST00000573028 ITPK1Q13572 414 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 HEATR3Q7Z4Q2 680 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 CELF1Q92879 486 aaKnown RBP19.2■□□□□ 0.66
VPS53-215ENST00000573028 CRNKL1Q9BZJ0 848 aaKnown RBP19.2■□□□□ 0.66
VPS53-215ENST00000573028 TMEM60Q9H2L4 133 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 TMEM51Q9NW97 253 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 COL1A1P02452 1464 aaPredicted RBP19.2■□□□□ 0.66
VPS53-215ENST00000573028 LOC102724428A0A0B4J2F2 783 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 USP17L8P0C7I0 530 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 SIK1P57059 783 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 MB21D1Q8N884 522 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 CCDC148Q8NFR7 591 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 CAGE1Q8TC20 777 aa19.2■□□□□ 0.66
VPS53-215ENST00000573028 ATP1A1P05023 1023 aaKnown RBP19.19■□□□□ 0.66
VPS53-215ENST00000573028 KLK7P49862 253 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 TRIM14Q14142 442 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 LEKR1Q6ZMV7 388 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 HNRNPLLQ8WVV9 542 aaKnown RBP19.19■□□□□ 0.66
VPS53-215ENST00000573028 MINPP1Q9UNW1 487 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 H7C1D1 291 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 TFAP4Q01664 338 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 CPVLQ9H3G5 476 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 DISC1Q9NRI5 854 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 ERCC3P19447 782 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 CCDC178Q5BJE1 867 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 NSUN4Q96CB9 384 aaKnown RBP19.19■□□□□ 0.66
VPS53-215ENST00000573028 DYNLL2Q96FJ2 89 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 AGPAT5Q9NUQ2 364 aa19.19■□□□□ 0.66
VPS53-215ENST00000573028 MACROD2A1Z1Q3 448 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 LRRIQ3A6PVS8 624 aaPredicted RBP19.18■□□□□ 0.66
VPS53-215ENST00000573028 USP5P45974 858 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 CYP27A1Q02318 531 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 TUBB2AQ13885 445 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 TYW1BQ6NUM6 668 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 C10orf67Q8IYJ2 551 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 MMS19Q96T76 1030 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 TUBB2BQ9BVA1 445 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 ZNF804BA4D1E1 1349 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 PSMA7O14818 248 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 KIF5BP33176 963 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 LONP1P36776 959 aaKnown RBP19.18■□□□□ 0.66
VPS53-215ENST00000573028 TRAPPC10P48553 1259 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 STIM1Q13586 685 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 UBE4AQ14139 1066 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 GSPT2Q8IYD1 628 aaKnown RBP19.18■□□□□ 0.66
VPS53-215ENST00000573028 ADSSL1Q8N142 457 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 GBP3Q9H0R5 595 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 ITGB4P16144 1822 aa19.18■□□□□ 0.66
VPS53-215ENST00000573028 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.18■□□□□ 0.66
VPS53-215ENST00000573028 IPO7O95373 1038 aaKnown RBP19.17■□□□□ 0.66
VPS53-215ENST00000573028 GOLGA8HP0CJ92 632 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 CSGALNACT2Q8N6G5 542 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 DRC1Q96MC2 740 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 PYM1Q9BRP8 204 aaKnown RBP19.17■□□□□ 0.66
VPS53-215ENST00000573028 LCMT1Q9UIC8 334 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 STX8Q9UNK0 236 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 CALML3P27482 149 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 PNMA1Q8ND90 353 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.17■□□□□ 0.66
VPS53-215ENST00000573028 DUSP10Q9Y6W6 482 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 LGALS16A8MUM7 142 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 TBC1D8BQ0IIM8 1120 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 NAALADL2Q58DX5 795 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 JADE2Q9NQC1 790 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 SAR1BQ9Y6B6 198 aa19.17■□□□□ 0.66
VPS53-215ENST00000573028 DOCK2Q92608 1830 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 USP17L3A6NCW0 530 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 USP17L4A6NCW7 530 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 TRIM66O15016 1216 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 ZNF185O15231 689 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms